miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5594 3' -55.1 NC_001806.1 + 19220 0.66 0.921915
Target:  5'- --cGG-GCCcgcuugGGUCGUGGGGGAAUgUCg -3'
miRNA:   3'- ugaCCaCGG------CCAGCACUCUCUUAgGG- -5'
5594 3' -55.1 NC_001806.1 + 42750 0.66 0.921915
Target:  5'- -gUGGU-CCGGUUGU-AGcGGggUCCCg -3'
miRNA:   3'- ugACCAcGGCCAGCAcUC-UCuuAGGG- -5'
5594 3' -55.1 NC_001806.1 + 49398 0.67 0.916256
Target:  5'- --cGGUGCgCGGUCGccuggacgaugaUGAuGAGGuUCCCc -3'
miRNA:   3'- ugaCCACG-GCCAGC------------ACU-CUCUuAGGG- -5'
5594 3' -55.1 NC_001806.1 + 54513 0.68 0.88443
Target:  5'- gGCUGGUGaCUGc-CGUGGuguucuagaacGGGAAUCCCg -3'
miRNA:   3'- -UGACCAC-GGCcaGCACU-----------CUCUUAGGG- -5'
5594 3' -55.1 NC_001806.1 + 63595 0.68 0.88443
Target:  5'- uGCUGGUGucCCGGUCGaac-AGggUCCa -3'
miRNA:   3'- -UGACCAC--GGCCAGCacucUCuuAGGg -5'
5594 3' -55.1 NC_001806.1 + 66591 0.66 0.921915
Target:  5'- --cGGUGCCGuGaaUCGUGuuggugauccGGAGGcgCCCa -3'
miRNA:   3'- ugaCCACGGC-C--AGCAC----------UCUCUuaGGG- -5'
5594 3' -55.1 NC_001806.1 + 82141 0.67 0.910358
Target:  5'- -aUGGUGuCCaGGUCGccGAGGGAcagCCCc -3'
miRNA:   3'- ugACCAC-GG-CCAGCa-CUCUCUua-GGG- -5'
5594 3' -55.1 NC_001806.1 + 115564 0.67 0.897856
Target:  5'- --gGGUGCCGcGaacUCGUG-GAGGA-CCCg -3'
miRNA:   3'- ugaCCACGGC-C---AGCACuCUCUUaGGG- -5'
5594 3' -55.1 NC_001806.1 + 117205 1.1 0.00303
Target:  5'- uACUGGUGCCGGUCGUGAGAGAAUCCCc -3'
miRNA:   3'- -UGACCACGGCCAGCACUCUCUUAGGG- -5'
5594 3' -55.1 NC_001806.1 + 117985 0.66 0.946635
Target:  5'- gGCUcgGGUGuuGGcCGUGAacgcGGGAUCCa -3'
miRNA:   3'- -UGA--CCACggCCaGCACUc---UCUUAGGg -5'
5594 3' -55.1 NC_001806.1 + 151321 0.66 0.921915
Target:  5'- uCUGGcGCCGGcUCGggcGGGGGGcuGUCCg -3'
miRNA:   3'- uGACCaCGGCC-AGCa--CUCUCU--UAGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.