miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5594 5' -57.6 NC_001806.1 + 117239 1.1 0.001786
Target:  5'- cCCACGCUUCCCGCCAACACCCCCUUCc -3'
miRNA:   3'- -GGUGCGAAGGGCGGUUGUGGGGGAAG- -5'
5594 5' -57.6 NC_001806.1 + 116036 0.82 0.129846
Target:  5'- aCCGCGCUccUCCCGCCAcccgaaccaccacuGCACUCCCUg- -3'
miRNA:   3'- -GGUGCGA--AGGGCGGU--------------UGUGGGGGAag -5'
5594 5' -57.6 NC_001806.1 + 84037 0.77 0.286378
Target:  5'- uCCuguUGCUcCUCGCCGGCACCCCCgccgUCu -3'
miRNA:   3'- -GGu--GCGAaGGGCGGUUGUGGGGGa---AG- -5'
5594 5' -57.6 NC_001806.1 + 68117 0.76 0.306738
Target:  5'- aCCGCGgUcUCCCGuCCGAgGCCCCCgUCg -3'
miRNA:   3'- -GGUGCgA-AGGGC-GGUUgUGGGGGaAG- -5'
5594 5' -57.6 NC_001806.1 + 34689 0.76 0.33558
Target:  5'- cCCGCGCaccCCCGCCcACAUCCCCc-- -3'
miRNA:   3'- -GGUGCGaa-GGGCGGuUGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 69846 0.75 0.361615
Target:  5'- uCCGCGCUUCUCcccucgggcagcccaGCC-ACGCCCCCUc- -3'
miRNA:   3'- -GGUGCGAAGGG---------------CGGuUGUGGGGGAag -5'
5594 5' -57.6 NC_001806.1 + 60027 0.75 0.374344
Target:  5'- gCCGCGCUgccgUCCGCC-GCGCCCUCg-- -3'
miRNA:   3'- -GGUGCGAa---GGGCGGuUGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 57876 0.75 0.390677
Target:  5'- uCCGCGCgccaUCCuCGCCccccgAGCGCCCCCg-- -3'
miRNA:   3'- -GGUGCGa---AGG-GCGG-----UUGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 74269 0.74 0.407468
Target:  5'- gCGCGCcgccaUUCCCGCCc-CGCCCCCg-- -3'
miRNA:   3'- gGUGCG-----AAGGGCGGuuGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 96531 0.74 0.407468
Target:  5'- cCgGCGCcgCCCGCCccuGGCGCCCCCc-- -3'
miRNA:   3'- -GgUGCGaaGGGCGG---UUGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 63709 0.74 0.433483
Target:  5'- -aGCGCUgggCCucuuCGCCGGCgaggACCCCCUUCa -3'
miRNA:   3'- ggUGCGAa--GG----GCGGUUG----UGGGGGAAG- -5'
5594 5' -57.6 NC_001806.1 + 22937 0.73 0.450451
Target:  5'- gCCcCGCUUCCCcgccgcgccgcacGCCGACGCgCCCCg-- -3'
miRNA:   3'- -GGuGCGAAGGG-------------CGGUUGUG-GGGGaag -5'
5594 5' -57.6 NC_001806.1 + 23389 0.73 0.451354
Target:  5'- cCCGCGCcccccUCCCcgcGCCcGCGCCCCCcUCc -3'
miRNA:   3'- -GGUGCGa----AGGG---CGGuUGUGGGGGaAG- -5'
5594 5' -57.6 NC_001806.1 + 96356 0.73 0.451354
Target:  5'- cCCcCGUagUCCCGCCAugcgccaggGCGCCCCCg-- -3'
miRNA:   3'- -GGuGCGa-AGGGCGGU---------UGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 53037 0.73 0.46962
Target:  5'- cCCACGCcgccucggCCCGCgAacggcACGCCCCCUa- -3'
miRNA:   3'- -GGUGCGaa------GGGCGgU-----UGUGGGGGAag -5'
5594 5' -57.6 NC_001806.1 + 108797 0.73 0.488257
Target:  5'- aCGuCGCUUCCCaCCGGCACgUCCUUUg -3'
miRNA:   3'- gGU-GCGAAGGGcGGUUGUGgGGGAAG- -5'
5594 5' -57.6 NC_001806.1 + 23510 0.72 0.497704
Target:  5'- gUCGCGCcggCCCGCCGAgGgCCCCg-- -3'
miRNA:   3'- -GGUGCGaa-GGGCGGUUgUgGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 843 0.72 0.507233
Target:  5'- cCCuCGCccccUCCCGCCccuCGCCCCCUc- -3'
miRNA:   3'- -GGuGCGa---AGGGCGGuu-GUGGGGGAag -5'
5594 5' -57.6 NC_001806.1 + 877 0.72 0.507233
Target:  5'- cCCuCGCccccUCCCGCCccuCGCCCCCUc- -3'
miRNA:   3'- -GGuGCGa---AGGGCGGuu-GUGGGGGAag -5'
5594 5' -57.6 NC_001806.1 + 911 0.72 0.507233
Target:  5'- cCCuCGCccccUCCCGCCccuCGCCCCCUc- -3'
miRNA:   3'- -GGuGCGa---AGGGCGGuu-GUGGGGGAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.