miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5594 5' -57.6 NC_001806.1 + 293 0.66 0.858169
Target:  5'- cCCcCGC-UCCCGCgGcccCGCCCCCc-- -3'
miRNA:   3'- -GGuGCGaAGGGCGgUu--GUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 336 0.67 0.800479
Target:  5'- gCACGCcgCCCGgaCCGcCGCCCgCCUUUu -3'
miRNA:   3'- gGUGCGaaGGGC--GGUuGUGGG-GGAAG- -5'
5594 5' -57.6 NC_001806.1 + 843 0.72 0.507233
Target:  5'- cCCuCGCccccUCCCGCCccuCGCCCCCUc- -3'
miRNA:   3'- -GGuGCGa---AGGGCGGuu-GUGGGGGAag -5'
5594 5' -57.6 NC_001806.1 + 877 0.72 0.507233
Target:  5'- cCCuCGCccccUCCCGCCccuCGCCCCCUc- -3'
miRNA:   3'- -GGuGCGa---AGGGCGGuu-GUGGGGGAag -5'
5594 5' -57.6 NC_001806.1 + 911 0.72 0.507233
Target:  5'- cCCuCGCccccUCCCGCCccuCGCCCCCUc- -3'
miRNA:   3'- -GGuGCGa---AGGGCGGuu-GUGGGGGAag -5'
5594 5' -57.6 NC_001806.1 + 945 0.72 0.507233
Target:  5'- cCCuCGCccccUCCCGCCccuCGCCCCCUc- -3'
miRNA:   3'- -GGuGCGa---AGGGCGGuu-GUGGGGGAag -5'
5594 5' -57.6 NC_001806.1 + 979 0.72 0.507233
Target:  5'- cCCuCGCccccUCCCGCCccCGCCCCCUc- -3'
miRNA:   3'- -GGuGCGa---AGGGCGGuuGUGGGGGAag -5'
5594 5' -57.6 NC_001806.1 + 1012 0.72 0.507233
Target:  5'- cCCuCGCccccUCCCGCCccuCGCCCCCUc- -3'
miRNA:   3'- -GGuGCGa---AGGGCGGuu-GUGGGGGAag -5'
5594 5' -57.6 NC_001806.1 + 1046 0.72 0.507233
Target:  5'- cCCuCGCccccUCCCGCCccuCGCCCCCUc- -3'
miRNA:   3'- -GGuGCGa---AGGGCGGuu-GUGGGGGAag -5'
5594 5' -57.6 NC_001806.1 + 1080 0.72 0.507233
Target:  5'- cCCuCGCccccUCCCGCCccuCGCCCCCUc- -3'
miRNA:   3'- -GGuGCGa---AGGGCGGuu-GUGGGGGAag -5'
5594 5' -57.6 NC_001806.1 + 1114 0.72 0.507233
Target:  5'- cCCuCGCccccUCCCGCCccuCGCCCCCUc- -3'
miRNA:   3'- -GGuGCGa---AGGGCGGuu-GUGGGGGAag -5'
5594 5' -57.6 NC_001806.1 + 1342 0.69 0.666382
Target:  5'- -gGCGUggccaagCCCGCCucCGCCCCCa-- -3'
miRNA:   3'- ggUGCGaa-----GGGCGGuuGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 1573 0.66 0.842579
Target:  5'- gCGCGCa--CCGCCucGCGCCCCag-Cg -3'
miRNA:   3'- gGUGCGaagGGCGGu-UGUGGGGgaaG- -5'
5594 5' -57.6 NC_001806.1 + 1913 0.67 0.808359
Target:  5'- aCACGCggCCCgagGCCAGCACCgugcggcgcagguCCCg-- -3'
miRNA:   3'- gGUGCGaaGGG---CGGUUGUGG-------------GGGaag -5'
5594 5' -57.6 NC_001806.1 + 3686 0.69 0.676415
Target:  5'- cCCGCGgccCCCGUCAGCGCCgCgUUCu -3'
miRNA:   3'- -GGUGCgaaGGGCGGUUGUGGgGgAAG- -5'
5594 5' -57.6 NC_001806.1 + 4106 0.69 0.676415
Target:  5'- gUCGCGCcUCcuCCGCCucggGCGCCCCCc-- -3'
miRNA:   3'- -GGUGCGaAG--GGCGGu---UGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 4205 0.67 0.782547
Target:  5'- gCCACgGCUcCCCGCUGACGuaCCCgUCg -3'
miRNA:   3'- -GGUG-CGAaGGGCGGUUGUggGGGaAG- -5'
5594 5' -57.6 NC_001806.1 + 4336 0.66 0.858169
Target:  5'- gCCGCGCgggCCCGgCGGCGCUcgaugcggCCCg-- -3'
miRNA:   3'- -GGUGCGaa-GGGCgGUUGUGG--------GGGaag -5'
5594 5' -57.6 NC_001806.1 + 5825 0.66 0.834502
Target:  5'- cCCGCGCg-CCCGUUGGCcguccccggGCCCCCcggUCc -3'
miRNA:   3'- -GGUGCGaaGGGCGGUUG---------UGGGGGa--AG- -5'
5594 5' -57.6 NC_001806.1 + 5901 0.67 0.800479
Target:  5'- cCCAaggGCcgCCCGCCuugcCGCCCCCc-- -3'
miRNA:   3'- -GGUg--CGaaGGGCGGuu--GUGGGGGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.