miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5594 5' -57.6 NC_001806.1 + 132498 0.66 0.842579
Target:  5'- uCCACGCcgCCC-CCGggGCccugGCCCCCgUCu -3'
miRNA:   3'- -GGUGCGaaGGGcGGU--UG----UGGGGGaAG- -5'
5594 5' -57.6 NC_001806.1 + 102972 0.66 0.842579
Target:  5'- cCCGuCGCccccaCCCGCCGGCucAUCCCCg-- -3'
miRNA:   3'- -GGU-GCGaa---GGGCGGUUG--UGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 1573 0.66 0.842579
Target:  5'- gCGCGCa--CCGCCucGCGCCCCag-Cg -3'
miRNA:   3'- gGUGCGaagGGCGGu-UGUGGGGgaaG- -5'
5594 5' -57.6 NC_001806.1 + 143186 0.66 0.834502
Target:  5'- cCCGaacCGC--CCCGCCGcuuuGC-CCCCCUUUg -3'
miRNA:   3'- -GGU---GCGaaGGGCGGU----UGuGGGGGAAG- -5'
5594 5' -57.6 NC_001806.1 + 20157 0.66 0.834502
Target:  5'- aCC-CGCccCCCGCCGcccgggccCGCCCCCg-- -3'
miRNA:   3'- -GGuGCGaaGGGCGGUu-------GUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 5825 0.66 0.834502
Target:  5'- cCCGCGCg-CCCGUUGGCcguccccggGCCCCCcggUCc -3'
miRNA:   3'- -GGUGCGaaGGGCGGUUG---------UGGGGGa--AG- -5'
5594 5' -57.6 NC_001806.1 + 143916 0.66 0.833685
Target:  5'- cCCACGCccCCacugaGCCcggucgaucgacgAGCACCCCCg-- -3'
miRNA:   3'- -GGUGCGaaGGg----CGG-------------UUGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 79887 0.67 0.82957
Target:  5'- gCCAgGCUucUCCCGCUcucccuaucgaucccGuucCGCCCCCggUCg -3'
miRNA:   3'- -GGUgCGA--AGGGCGG---------------Uu--GUGGGGGa-AG- -5'
5594 5' -57.6 NC_001806.1 + 98348 0.67 0.822895
Target:  5'- gCCGCGCcgacaucaccaCCGUCAGCACCUUCaUCg -3'
miRNA:   3'- -GGUGCGaag--------GGCGGUUGUGGGGGaAG- -5'
5594 5' -57.6 NC_001806.1 + 77393 0.67 0.817819
Target:  5'- -gGCGCggcggCCgCGCCcGCGCCCCUg-- -3'
miRNA:   3'- ggUGCGaa---GG-GCGGuUGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 71007 0.67 0.817819
Target:  5'- gCAUGCg-CCCGagGACGCCCCCc-- -3'
miRNA:   3'- gGUGCGaaGGGCggUUGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 65671 0.67 0.817819
Target:  5'- gCUGCGCUggggCCGCCGGCcuccuguCCCCCa-- -3'
miRNA:   3'- -GGUGCGAag--GGCGGUUGu------GGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 24210 0.67 0.817819
Target:  5'- cCUGCGaCUggCCCGCCGACggGCCCgCggugUCg -3'
miRNA:   3'- -GGUGC-GAa-GGGCGGUUG--UGGGgGa---AG- -5'
5594 5' -57.6 NC_001806.1 + 65389 0.67 0.817819
Target:  5'- gCCACGaCggcggUCCCGCCGuCGCUgCCg-- -3'
miRNA:   3'- -GGUGC-Ga----AGGGCGGUuGUGGgGGaag -5'
5594 5' -57.6 NC_001806.1 + 119286 0.67 0.817819
Target:  5'- cCCACGCgggggcgCCCGCaGAC-CCgCCCaUCg -3'
miRNA:   3'- -GGUGCGaa-----GGGCGgUUGuGG-GGGaAG- -5'
5594 5' -57.6 NC_001806.1 + 126708 0.67 0.817819
Target:  5'- gCCGCGag-CCCGUCuucGCgaACCCCCgUCa -3'
miRNA:   3'- -GGUGCgaaGGGCGGu--UG--UGGGGGaAG- -5'
5594 5' -57.6 NC_001806.1 + 112915 0.67 0.817819
Target:  5'- cCCGCGcCUUCCCGCCc-CGCCagCUg- -3'
miRNA:   3'- -GGUGC-GAAGGGCGGuuGUGGggGAag -5'
5594 5' -57.6 NC_001806.1 + 75268 0.67 0.809227
Target:  5'- -gGCGCgg-CCGCCAGCGacccggccucCCCCCUg- -3'
miRNA:   3'- ggUGCGaagGGCGGUUGU----------GGGGGAag -5'
5594 5' -57.6 NC_001806.1 + 106131 0.67 0.809227
Target:  5'- -aACGCgagCCUGCC--CGCCCCCa-- -3'
miRNA:   3'- ggUGCGaa-GGGCGGuuGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 137823 0.67 0.809227
Target:  5'- gUACGCggCCCGCCuGCGgCCCgUg- -3'
miRNA:   3'- gGUGCGaaGGGCGGuUGUgGGGgAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.