miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5595 3' -55.5 NC_001806.1 + 3900 0.66 0.929053
Target:  5'- aGCUGCUGUUgcGCGcGGCGCcCGa-- -3'
miRNA:   3'- -CGACGGCGAaaUGCuCCGCGaGCagc -5'
5595 3' -55.5 NC_001806.1 + 109478 0.66 0.929053
Target:  5'- gGCUGgCGUgggGCGGGGaUGC-CGUCa -3'
miRNA:   3'- -CGACgGCGaaaUGCUCC-GCGaGCAGc -5'
5595 3' -55.5 NC_001806.1 + 25008 0.66 0.929053
Target:  5'- --gGCCGggacgggGCGGGGCGCUUGUg- -3'
miRNA:   3'- cgaCGGCgaaa---UGCUCCGCGAGCAgc -5'
5595 3' -55.5 NC_001806.1 + 83651 0.66 0.929053
Target:  5'- aCUGCUGCUUccguaccgacgGCGGGGUGCcCGggCGg -3'
miRNA:   3'- cGACGGCGAAa----------UGCUCCGCGaGCa-GC- -5'
5595 3' -55.5 NC_001806.1 + 1478 0.66 0.925881
Target:  5'- --cGCCGCgcagcaccagcgGgGGGGCGUcgUCGUCGg -3'
miRNA:   3'- cgaCGGCGaaa---------UgCUCCGCG--AGCAGC- -5'
5595 3' -55.5 NC_001806.1 + 113066 0.66 0.923718
Target:  5'- --aGCCGCcaauccgUACGGGGCGUaCGUgGc -3'
miRNA:   3'- cgaCGGCGaa-----AUGCUCCGCGaGCAgC- -5'
5595 3' -55.5 NC_001806.1 + 3465 0.66 0.912334
Target:  5'- cGCgGCCGgcCUggGCGcGGCGCccggCGUCGu -3'
miRNA:   3'- -CGaCGGC--GAaaUGCuCCGCGa---GCAGC- -5'
5595 3' -55.5 NC_001806.1 + 147768 0.66 0.912334
Target:  5'- cGCgGCCGCggacGCGGGGgGCcCGgggCGg -3'
miRNA:   3'- -CGaCGGCGaaa-UGCUCCgCGaGCa--GC- -5'
5595 3' -55.5 NC_001806.1 + 4903 0.67 0.900005
Target:  5'- aGCUGUCGCg--GCGAgacGGCGUccccggCGUCc -3'
miRNA:   3'- -CGACGGCGaaaUGCU---CCGCGa-----GCAGc -5'
5595 3' -55.5 NC_001806.1 + 91511 0.67 0.893492
Target:  5'- uGCUGUuuuaccuggagCGCU--GCGAcGGCGCcgugaUCGUCGg -3'
miRNA:   3'- -CGACG-----------GCGAaaUGCU-CCGCG-----AGCAGC- -5'
5595 3' -55.5 NC_001806.1 + 1823 0.67 0.893492
Target:  5'- cGUUGCCGCc--GCGgcacAGGCGCagcggcggcgCGUCGg -3'
miRNA:   3'- -CGACGGCGaaaUGC----UCCGCGa---------GCAGC- -5'
5595 3' -55.5 NC_001806.1 + 4461 0.67 0.893492
Target:  5'- gGCUGCCG----GCGccGCGCUCGaCGg -3'
miRNA:   3'- -CGACGGCgaaaUGCucCGCGAGCaGC- -5'
5595 3' -55.5 NC_001806.1 + 95224 0.67 0.88675
Target:  5'- --cGCCGCUcUUGC--GGCGCcUCGUCa -3'
miRNA:   3'- cgaCGGCGA-AAUGcuCCGCG-AGCAGc -5'
5595 3' -55.5 NC_001806.1 + 134260 0.67 0.879785
Target:  5'- gGCaGCCGga--AUGAGGaGCUCGUCGg -3'
miRNA:   3'- -CGaCGGCgaaaUGCUCCgCGAGCAGC- -5'
5595 3' -55.5 NC_001806.1 + 33721 0.68 0.865199
Target:  5'- uCUGCCGCUUgu-GAGuGCGCgCGcCGg -3'
miRNA:   3'- cGACGGCGAAaugCUC-CGCGaGCaGC- -5'
5595 3' -55.5 NC_001806.1 + 114089 0.68 0.865199
Target:  5'- cGCUGCUGCaccGCGGGG-GUUCGcuUCGa -3'
miRNA:   3'- -CGACGGCGaaaUGCUCCgCGAGC--AGC- -5'
5595 3' -55.5 NC_001806.1 + 94151 0.68 0.865199
Target:  5'- aGCUGaacgCGCUUcaggUGCG-GGCGCUgcggCGUCGu -3'
miRNA:   3'- -CGACg---GCGAA----AUGCuCCGCGA----GCAGC- -5'
5595 3' -55.5 NC_001806.1 + 139119 0.68 0.85759
Target:  5'- gGCUcGCCGC---GCGGGGgGCUgaugucCGUCGc -3'
miRNA:   3'- -CGA-CGGCGaaaUGCUCCgCGA------GCAGC- -5'
5595 3' -55.5 NC_001806.1 + 2013 0.68 0.849777
Target:  5'- uGCUGCCGCgacaccGCG-GGC-C-CGUCGg -3'
miRNA:   3'- -CGACGGCGaaa---UGCuCCGcGaGCAGC- -5'
5595 3' -55.5 NC_001806.1 + 38214 0.68 0.849777
Target:  5'- cCUGCCGCUccgucggACGAGGCGuCUgGg-- -3'
miRNA:   3'- cGACGGCGAaa-----UGCUCCGC-GAgCagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.