miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5595 5' -58.3 NC_001806.1 + 98197 0.66 0.824436
Target:  5'- gGCCCGuugguCGaGGGgCAGCUGGGGGAgaACa -3'
miRNA:   3'- -UGGGU-----GCgCCCgGUUGAUCCUCUg-UG- -5'
5595 5' -58.3 NC_001806.1 + 137002 0.66 0.824436
Target:  5'- gGCCgGCGgGGagcGCCAGCUAGacGGACAg -3'
miRNA:   3'- -UGGgUGCgCC---CGGUUGAUCc-UCUGUg -5'
5595 5' -58.3 NC_001806.1 + 128555 0.66 0.824436
Target:  5'- gGCCCGCGUccaGGGCgCGGuCguagcGGGAGGuCACg -3'
miRNA:   3'- -UGGGUGCG---CCCG-GUU-Ga----UCCUCU-GUG- -5'
5595 5' -58.3 NC_001806.1 + 93891 0.66 0.824436
Target:  5'- gGCCCGCGgGaGGCCGccccgaAgaGGGGGACc- -3'
miRNA:   3'- -UGGGUGCgC-CCGGU------UgaUCCUCUGug -5'
5595 5' -58.3 NC_001806.1 + 46214 0.66 0.824436
Target:  5'- gGCCCcCGCGGccCCGGCggcGGAGAcCACc -3'
miRNA:   3'- -UGGGuGCGCCc-GGUUGau-CCUCU-GUG- -5'
5595 5' -58.3 NC_001806.1 + 36207 0.66 0.823593
Target:  5'- -gCCGCGCGGGCgGccaugccgcuggaGCUGauGGAG-CGCa -3'
miRNA:   3'- ugGGUGCGCCCGgU-------------UGAU--CCUCuGUG- -5'
5595 5' -58.3 NC_001806.1 + 14374 0.66 0.81593
Target:  5'- cCCCAgG-GGGCUGGggugAGGGGACACu -3'
miRNA:   3'- uGGGUgCgCCCGGUUga--UCCUCUGUG- -5'
5595 5' -58.3 NC_001806.1 + 21919 0.66 0.81593
Target:  5'- gGCCCGCGCGgcgguGGCCGGCc--GcGACGCc -3'
miRNA:   3'- -UGGGUGCGC-----CCGGUUGaucCuCUGUG- -5'
5595 5' -58.3 NC_001806.1 + 147232 0.66 0.81593
Target:  5'- cCCCGCGgGGGUCGggGCcgAGGAGGa-- -3'
miRNA:   3'- uGGGUGCgCCCGGU--UGa-UCCUCUgug -5'
5595 5' -58.3 NC_001806.1 + 146774 0.66 0.81593
Target:  5'- uCCgACGCggGGGCCGucggguACUcGGGGGGCAUc -3'
miRNA:   3'- uGGgUGCG--CCCGGU------UGA-UCCUCUGUG- -5'
5595 5' -58.3 NC_001806.1 + 72524 0.66 0.81507
Target:  5'- aGCCCugcgucgGCGUGGGCCcccgggaggGGgUAGGGGGCcCg -3'
miRNA:   3'- -UGGG-------UGCGCCCGG---------UUgAUCCUCUGuG- -5'
5595 5' -58.3 NC_001806.1 + 117823 0.66 0.81507
Target:  5'- cGCCCcgggAUGCaGGGCCAggaccugcgucagACUGuGGAcGACGCa -3'
miRNA:   3'- -UGGG----UGCG-CCCGGU-------------UGAU-CCU-CUGUG- -5'
5595 5' -58.3 NC_001806.1 + 33806 0.66 0.80726
Target:  5'- aGCCgGCcgGCGGGUgGACUcgcGGGGGGC-Cg -3'
miRNA:   3'- -UGGgUG--CGCCCGgUUGA---UCCUCUGuG- -5'
5595 5' -58.3 NC_001806.1 + 133230 0.66 0.80726
Target:  5'- cGCCCG-GCGGGCCAuc---GAGACGg -3'
miRNA:   3'- -UGGGUgCGCCCGGUugaucCUCUGUg -5'
5595 5' -58.3 NC_001806.1 + 91904 0.66 0.80726
Target:  5'- cCCCACGgccaUGGGgCGGCU-GGAGAC-Ca -3'
miRNA:   3'- uGGGUGC----GCCCgGUUGAuCCUCUGuG- -5'
5595 5' -58.3 NC_001806.1 + 30585 0.66 0.80726
Target:  5'- cCUCGCGCcggcagGGGCCAAgaGGGcggcGACGCa -3'
miRNA:   3'- uGGGUGCG------CCCGGUUgaUCCu---CUGUG- -5'
5595 5' -58.3 NC_001806.1 + 108046 0.66 0.80726
Target:  5'- -gCCGC-CGGGCCGAC--GGAGgGCGCc -3'
miRNA:   3'- ugGGUGcGCCCGGUUGauCCUC-UGUG- -5'
5595 5' -58.3 NC_001806.1 + 30864 0.66 0.80726
Target:  5'- -gCCGCGgGGGCCGaggaaguguGCccGGAaGACGCg -3'
miRNA:   3'- ugGGUGCgCCCGGU---------UGauCCU-CUGUG- -5'
5595 5' -58.3 NC_001806.1 + 150972 0.66 0.798434
Target:  5'- gGCCCGCucGCGGGCCcACgAGccgcGGCGCg -3'
miRNA:   3'- -UGGGUG--CGCCCGGuUGaUCcu--CUGUG- -5'
5595 5' -58.3 NC_001806.1 + 6450 0.66 0.798434
Target:  5'- --aCGCGgGGGCgGAggagGGGGGACGCg -3'
miRNA:   3'- uggGUGCgCCCGgUUga--UCCUCUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.