miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5596 5' -51.7 NC_001806.1 + 113605 0.66 0.98824
Target:  5'- cGGCGUUCGugaACGACUacucgcUGGUCUCGUAc- -3'
miRNA:   3'- -CUGCAGGU---UGUUGA------GCCAGGGCAUuu -5'
5596 5' -51.7 NC_001806.1 + 4928 0.66 0.98824
Target:  5'- cGGCGUCCucgcCGGCgUCGGUgCCCGc--- -3'
miRNA:   3'- -CUGCAGGuu--GUUG-AGCCA-GGGCauuu -5'
5596 5' -51.7 NC_001806.1 + 113377 0.66 0.98824
Target:  5'- uAUGUCCGGCGGCguucCGGgacgCCCGg--- -3'
miRNA:   3'- cUGCAGGUUGUUGa---GCCa---GGGCauuu -5'
5596 5' -51.7 NC_001806.1 + 49354 0.66 0.986824
Target:  5'- aGCGUcCCGGCAGCgccccgggcccgaugCGG-CCCGUAGc -3'
miRNA:   3'- cUGCA-GGUUGUUGa--------------GCCaGGGCAUUu -5'
5596 5' -51.7 NC_001806.1 + 66577 0.66 0.986659
Target:  5'- gGGCGUCauguc-CUCGGUgCCGUGAAu -3'
miRNA:   3'- -CUGCAGguuguuGAGCCAgGGCAUUU- -5'
5596 5' -51.7 NC_001806.1 + 87688 0.66 0.986659
Target:  5'- gGAUGUCgCGAUAGCUCaGGUCCUu---- -3'
miRNA:   3'- -CUGCAG-GUUGUUGAG-CCAGGGcauuu -5'
5596 5' -51.7 NC_001806.1 + 124351 0.66 0.983015
Target:  5'- uGGCGUCCcugcgcacAACAAacccCUCGGUCUCGa--- -3'
miRNA:   3'- -CUGCAGG--------UUGUU----GAGCCAGGGCauuu -5'
5596 5' -51.7 NC_001806.1 + 5584 0.66 0.983015
Target:  5'- cGACG-CCGGCAcGC-CGGgggCCCGUGGc -3'
miRNA:   3'- -CUGCaGGUUGU-UGaGCCa--GGGCAUUu -5'
5596 5' -51.7 NC_001806.1 + 79385 0.66 0.980933
Target:  5'- cGCGUCUGACGACUccggCGGcCCCGc--- -3'
miRNA:   3'- cUGCAGGUUGUUGA----GCCaGGGCauuu -5'
5596 5' -51.7 NC_001806.1 + 133684 0.67 0.978666
Target:  5'- cGCGUCguGCGugUCuGUCCCGg--- -3'
miRNA:   3'- cUGCAGguUGUugAGcCAGGGCauuu -5'
5596 5' -51.7 NC_001806.1 + 100526 0.67 0.978666
Target:  5'- uAUGUCCGugGACUCcGGggcCCCGUu-- -3'
miRNA:   3'- cUGCAGGUugUUGAG-CCa--GGGCAuuu -5'
5596 5' -51.7 NC_001806.1 + 134190 0.67 0.976205
Target:  5'- cGACGcCCAGCAGCUCcccaugaUCCCGgcGGg -3'
miRNA:   3'- -CUGCaGGUUGUUGAGcc-----AGGGCauUU- -5'
5596 5' -51.7 NC_001806.1 + 117960 0.67 0.976205
Target:  5'- cGACGa-CAGCGACgcCGGUCCCGg--- -3'
miRNA:   3'- -CUGCagGUUGUUGa-GCCAGGGCauuu -5'
5596 5' -51.7 NC_001806.1 + 102491 0.67 0.97067
Target:  5'- uGugG-CCGGCcgccCUCGGUCCCGa--- -3'
miRNA:   3'- -CugCaGGUUGuu--GAGCCAGGGCauuu -5'
5596 5' -51.7 NC_001806.1 + 16535 0.69 0.944151
Target:  5'- uGGCGUCCAGCucuuccgCGGuaaaUCCCGUGGc -3'
miRNA:   3'- -CUGCAGGUUGuuga---GCC----AGGGCAUUu -5'
5596 5' -51.7 NC_001806.1 + 26996 0.69 0.929095
Target:  5'- aGCGggCCGACcgGGCUCGGUUCCGg--- -3'
miRNA:   3'- cUGCa-GGUUG--UUGAGCCAGGGCauuu -5'
5596 5' -51.7 NC_001806.1 + 2614 0.7 0.917781
Target:  5'- gGugGUCCGugAGCUCGG-CCaCGg--- -3'
miRNA:   3'- -CugCAGGUugUUGAGCCaGG-GCauuu -5'
5596 5' -51.7 NC_001806.1 + 42749 0.7 0.892111
Target:  5'- uGugGUCCGGuugUAGCggGGUCCCGUGc- -3'
miRNA:   3'- -CugCAGGUU---GUUGagCCAGGGCAUuu -5'
5596 5' -51.7 NC_001806.1 + 74209 0.75 0.693345
Target:  5'- cGugGUCCAGCuGCUCGaGUCCCu---- -3'
miRNA:   3'- -CugCAGGUUGuUGAGC-CAGGGcauuu -5'
5596 5' -51.7 NC_001806.1 + 116664 1.06 0.011415
Target:  5'- gGACGUCCAACAACUCGGUCCCGUAAAc -3'
miRNA:   3'- -CUGCAGGUUGUUGAGCCAGGGCAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.