miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5597 3' -62.2 NC_001806.1 + 75506 0.66 0.6815
Target:  5'- cGCGGGaAAGCCuCGCGgGCcacgagggcagguucGGGGGCCu -3'
miRNA:   3'- -UGCCCcUUCGG-GUGCgCGc--------------CCUCUGG- -5'
5597 3' -62.2 NC_001806.1 + 3120 0.66 0.680535
Target:  5'- gGCGcGGGu--CCCGCggcaGCGCGGGgcccaGGGCCc -3'
miRNA:   3'- -UGC-CCCuucGGGUG----CGCGCCC-----UCUGG- -5'
5597 3' -62.2 NC_001806.1 + 25304 0.66 0.680535
Target:  5'- gGCGGGaGggGgCgAgGgGCGGGAGGg- -3'
miRNA:   3'- -UGCCC-CuuCgGgUgCgCGCCCUCUgg -5'
5597 3' -62.2 NC_001806.1 + 25372 0.66 0.680535
Target:  5'- gGCGGGaGggGgCgAgGgGCGGGAGGg- -3'
miRNA:   3'- -UGCCC-CuuCgGgUgCgCGCCCUCUgg -5'
5597 3' -62.2 NC_001806.1 + 25270 0.66 0.680535
Target:  5'- gGCGGGaGggGgCgAgGgGCGGGAGGg- -3'
miRNA:   3'- -UGCCC-CuuCgGgUgCgCGCCCUCUgg -5'
5597 3' -62.2 NC_001806.1 + 25100 0.66 0.680535
Target:  5'- gGCGGGaGggGgCgAgGgGCGGGAGGg- -3'
miRNA:   3'- -UGCCC-CuuCgGgUgCgCGCCCUCUgg -5'
5597 3' -62.2 NC_001806.1 + 25338 0.66 0.680535
Target:  5'- gGCGGGaGggGgCgAgGgGCGGGAGGg- -3'
miRNA:   3'- -UGCCC-CuuCgGgUgCgCGCCCUCUgg -5'
5597 3' -62.2 NC_001806.1 + 25168 0.66 0.680535
Target:  5'- gGCGGGaGggGgCgAgGgGCGGGAGGg- -3'
miRNA:   3'- -UGCCC-CuuCgGgUgCgCGCCCUCUgg -5'
5597 3' -62.2 NC_001806.1 + 146746 0.66 0.680535
Target:  5'- cACGGGGGucauccagaGGCuguuCCACuccgaCGCGGG-GGCCg -3'
miRNA:   3'- -UGCCCCU---------UCG----GGUGc----GCGCCCuCUGG- -5'
5597 3' -62.2 NC_001806.1 + 25134 0.66 0.680535
Target:  5'- gGCGGGaGggGgCgAgGgGCGGGAGGg- -3'
miRNA:   3'- -UGCCC-CuuCgGgUgCgCGCCCUCUgg -5'
5597 3' -62.2 NC_001806.1 + 30513 0.66 0.680535
Target:  5'- gGCGGcGGugcGUCCGaggaagagGCGCGGGucGGGCCa -3'
miRNA:   3'- -UGCC-CCuu-CGGGUg-------CGCGCCC--UCUGG- -5'
5597 3' -62.2 NC_001806.1 + 25202 0.66 0.680535
Target:  5'- gGCGGGaGggGgCgAgGgGCGGGAGGg- -3'
miRNA:   3'- -UGCCC-CuuCgGgUgCgCGCCCUCUgg -5'
5597 3' -62.2 NC_001806.1 + 38884 0.66 0.680535
Target:  5'- gGCGGGGucguugggauccAGGCUaCACGUGgccuCGGG-GACCg -3'
miRNA:   3'- -UGCCCC------------UUCGG-GUGCGC----GCCCuCUGG- -5'
5597 3' -62.2 NC_001806.1 + 4181 0.66 0.680535
Target:  5'- cCGGGGGcgggGGCCCgGCGC-CGGGccacGGCUc -3'
miRNA:   3'- uGCCCCU----UCGGG-UGCGcGCCCu---CUGG- -5'
5597 3' -62.2 NC_001806.1 + 25236 0.66 0.680535
Target:  5'- gGCGGGaGggGgCgAgGgGCGGGAGGg- -3'
miRNA:   3'- -UGCCC-CuuCgGgUgCgCGCCCUCUgg -5'
5597 3' -62.2 NC_001806.1 + 30262 0.66 0.679569
Target:  5'- cCGGGGcccGGCCCcCGCGCcccggcccccGGGGcggagccGGCCg -3'
miRNA:   3'- uGCCCCu--UCGGGuGCGCG----------CCCU-------CUGG- -5'
5597 3' -62.2 NC_001806.1 + 134036 0.66 0.679569
Target:  5'- gACGGaGuAAGgaCACGCGCauccgucGGGAGGCCa -3'
miRNA:   3'- -UGCC-CcUUCggGUGCGCG-------CCCUCUGG- -5'
5597 3' -62.2 NC_001806.1 + 81757 0.66 0.670861
Target:  5'- aGCGGcccccaGGAcgAGuCCCGCcgccaaaacgaGCGCGGGgGGGCCa -3'
miRNA:   3'- -UGCC------CCU--UC-GGGUG-----------CGCGCCC-UCUGG- -5'
5597 3' -62.2 NC_001806.1 + 36193 0.66 0.670861
Target:  5'- cGCGucGAuGCUCugcCGCGCGGGcGGCCa -3'
miRNA:   3'- -UGCccCUuCGGGu--GCGCGCCCuCUGG- -5'
5597 3' -62.2 NC_001806.1 + 41827 0.66 0.665042
Target:  5'- cGCGGGGGcgggcgucagGGCCCcggGCGCGUacgugcgagcgcgcaGGuAGGCCu -3'
miRNA:   3'- -UGCCCCU----------UCGGG---UGCGCG---------------CCcUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.