miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5597 3' -62.2 NC_001806.1 + 94748 0.66 0.640722
Target:  5'- cCGGGcugucGGAcGCcgaCCGCGCGCGGGcgcucuccguguuGGACCa -3'
miRNA:   3'- uGCCC-----CUU-CG---GGUGCGCGCCC-------------UCUGG- -5'
5597 3' -62.2 NC_001806.1 + 68321 0.66 0.651434
Target:  5'- --cGGGAAcggccaucGCCCcggcagACGCGCGGGAcugcuggcGGCCg -3'
miRNA:   3'- ugcCCCUU--------CGGG------UGCGCGCCCU--------CUGG- -5'
5597 3' -62.2 NC_001806.1 + 55739 0.66 0.641697
Target:  5'- cCGGGGGA-CCC-CGaUGUGGG-GGCCu -3'
miRNA:   3'- uGCCCCUUcGGGuGC-GCGCCCuCUGG- -5'
5597 3' -62.2 NC_001806.1 + 113847 0.66 0.650461
Target:  5'- uGCGGcGcGcGGCCCuggaccgccaucGCgacugccggguuaGCGCGGGGGGCCa -3'
miRNA:   3'- -UGCC-C-CuUCGGG------------UG-------------CGCGCCCUCUGG- -5'
5597 3' -62.2 NC_001806.1 + 114874 0.66 0.655326
Target:  5'- gGCGGGGggGuaaacuucacgcucaCCCAgcCGCGCGcGAacgugGACCu -3'
miRNA:   3'- -UGCCCCuuC---------------GGGU--GCGCGCcCU-----CUGG- -5'
5597 3' -62.2 NC_001806.1 + 74718 0.66 0.631952
Target:  5'- uGCGGG--AGCgCGCGCGCucccuGGAGGCa -3'
miRNA:   3'- -UGCCCcuUCGgGUGCGCGc----CCUCUGg -5'
5597 3' -62.2 NC_001806.1 + 31583 0.66 0.651434
Target:  5'- cGCGGGGAuGCgUggGaGUGGGGGugCg -3'
miRNA:   3'- -UGCCCCUuCGgGugCgCGCCCUCugG- -5'
5597 3' -62.2 NC_001806.1 + 92453 0.66 0.651434
Target:  5'- cGCGGGcGcGAGCgCCaACGCGUccGAGGCCg -3'
miRNA:   3'- -UGCCC-C-UUCG-GG-UGCGCGccCUCUGG- -5'
5597 3' -62.2 NC_001806.1 + 66520 0.66 0.641697
Target:  5'- uUGGGGAuuggcggccaGGCCCGCGa--GGGGGAa- -3'
miRNA:   3'- uGCCCCU----------UCGGGUGCgcgCCCUCUgg -5'
5597 3' -62.2 NC_001806.1 + 30640 0.66 0.651434
Target:  5'- cCGGGGggGCgCGgccaGgGUGGGcccgGGACCc -3'
miRNA:   3'- uGCCCCuuCGgGUg---CgCGCCC----UCUGG- -5'
5597 3' -62.2 NC_001806.1 + 69416 0.66 0.651434
Target:  5'- gGCGGcGGgcGUCCcCGCGCGGacgcccaccGGCCa -3'
miRNA:   3'- -UGCC-CCuuCGGGuGCGCGCCcu-------CUGG- -5'
5597 3' -62.2 NC_001806.1 + 23579 0.66 0.651434
Target:  5'- cACGGcGgcGCCCGCGgccgcCGCccuGGAGGCCu -3'
miRNA:   3'- -UGCCcCuuCGGGUGC-----GCGc--CCUCUGG- -5'
5597 3' -62.2 NC_001806.1 + 75506 0.66 0.6815
Target:  5'- cGCGGGaAAGCCuCGCGgGCcacgagggcagguucGGGGGCCu -3'
miRNA:   3'- -UGCCCcUUCGG-GUGCgCGc--------------CCUCUGG- -5'
5597 3' -62.2 NC_001806.1 + 23951 0.66 0.641697
Target:  5'- cUGGGGggGCcgccggagugguCCGCcgaGCGCGGcGGGCUg -3'
miRNA:   3'- uGCCCCuuCG------------GGUG---CGCGCCcUCUGG- -5'
5597 3' -62.2 NC_001806.1 + 96981 0.66 0.630978
Target:  5'- -aGGGGGucugucgguccacGGCCaagUACGUGCGcaacaaccuGGAGACCa -3'
miRNA:   3'- ugCCCCU-------------UCGG---GUGCGCGC---------CCUCUGG- -5'
5597 3' -62.2 NC_001806.1 + 73995 0.66 0.651434
Target:  5'- cCGGGGcGGCCC-CGCa-GGGGGcuCCg -3'
miRNA:   3'- uGCCCCuUCGGGuGCGcgCCCUCu-GG- -5'
5597 3' -62.2 NC_001806.1 + 62620 0.66 0.641697
Target:  5'- -aGGGGGugggugGGCuCCAgGCaCGGGAGcGCCu -3'
miRNA:   3'- ugCCCCU------UCG-GGUgCGcGCCCUC-UGG- -5'
5597 3' -62.2 NC_001806.1 + 46198 0.66 0.639748
Target:  5'- aGCGGGuGGcgacuaaGGCCCcCGCggccccgGCGGcgGAGACCa -3'
miRNA:   3'- -UGCCC-CU-------UCGGGuGCG-------CGCC--CUCUGG- -5'
5597 3' -62.2 NC_001806.1 + 31374 0.66 0.641697
Target:  5'- -aGGGGggGgUCGgGCGCuGGGuggucucuGGCCg -3'
miRNA:   3'- ugCCCCuuCgGGUgCGCG-CCCu-------CUGG- -5'
5597 3' -62.2 NC_001806.1 + 139824 0.66 0.641697
Target:  5'- uACGGGGccggGAGCgCCAggaccgccugcCGCGC-GGAGGCg -3'
miRNA:   3'- -UGCCCC----UUCG-GGU-----------GCGCGcCCUCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.