Results 21 - 40 of 213 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5597 | 3' | -62.2 | NC_001806.1 | + | 48307 | 0.66 | 0.665042 |
Target: 5'- gGCGGGGcuggcGGCuCCGCGCcuguccuuucuccccGCGGGAcacacgcgcaGACUg -3' miRNA: 3'- -UGCCCCu----UCG-GGUGCG---------------CGCCCU----------CUGG- -5' |
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5597 | 3' | -62.2 | NC_001806.1 | + | 2858 | 0.66 | 0.661158 |
Target: 5'- cGCGGGGAGGg--GgGCGCGGGcGuCCg -3' miRNA: 3'- -UGCCCCUUCgggUgCGCGCCCuCuGG- -5' |
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5597 | 3' | -62.2 | NC_001806.1 | + | 151562 | 0.66 | 0.661158 |
Target: 5'- gGCGGcGGggGCCgCGauggcgGCgGCGGcGGGCCa -3' miRNA: 3'- -UGCC-CCuuCGG-GUg-----CG-CGCCcUCUGG- -5' |
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5597 | 3' | -62.2 | NC_001806.1 | + | 54205 | 0.66 | 0.661158 |
Target: 5'- -gGGGGAGGCguuuugcuCCACGCcgugugucguuCGGGAucGACCa -3' miRNA: 3'- ugCCCCUUCG--------GGUGCGc----------GCCCU--CUGG- -5' |
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5597 | 3' | -62.2 | NC_001806.1 | + | 55691 | 0.66 | 0.661158 |
Target: 5'- uUGGGGuuugGGGUCgAUGUGgGGGuGACCu -3' miRNA: 3'- uGCCCC----UUCGGgUGCGCgCCCuCUGG- -5' |
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5597 | 3' | -62.2 | NC_001806.1 | + | 115115 | 0.66 | 0.661158 |
Target: 5'- uCGGGugcGCCCaggugccgcgGCGCGCaGGGAugGACCa -3' miRNA: 3'- uGCCCcuuCGGG----------UGCGCG-CCCU--CUGG- -5' |
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5597 | 3' | -62.2 | NC_001806.1 | + | 114874 | 0.66 | 0.655326 |
Target: 5'- gGCGGGGggGuaaacuucacgcucaCCCAgcCGCGCGcGAacgugGACCu -3' miRNA: 3'- -UGCCCCuuC---------------GGGU--GCGCGCcCU-----CUGG- -5' |
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5597 | 3' | -62.2 | NC_001806.1 | + | 92453 | 0.66 | 0.651434 |
Target: 5'- cGCGGGcGcGAGCgCCaACGCGUccGAGGCCg -3' miRNA: 3'- -UGCCC-C-UUCG-GG-UGCGCGccCUCUGG- -5' |
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5597 | 3' | -62.2 | NC_001806.1 | + | 68321 | 0.66 | 0.651434 |
Target: 5'- --cGGGAAcggccaucGCCCcggcagACGCGCGGGAcugcuggcGGCCg -3' miRNA: 3'- ugcCCCUU--------CGGG------UGCGCGCCCU--------CUGG- -5' |
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5597 | 3' | -62.2 | NC_001806.1 | + | 30640 | 0.66 | 0.651434 |
Target: 5'- cCGGGGggGCgCGgccaGgGUGGGcccgGGACCc -3' miRNA: 3'- uGCCCCuuCGgGUg---CgCGCCC----UCUGG- -5' |
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5597 | 3' | -62.2 | NC_001806.1 | + | 73995 | 0.66 | 0.651434 |
Target: 5'- cCGGGGcGGCCC-CGCa-GGGGGcuCCg -3' miRNA: 3'- uGCCCCuUCGGGuGCGcgCCCUCu-GG- -5' |
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5597 | 3' | -62.2 | NC_001806.1 | + | 69416 | 0.66 | 0.651434 |
Target: 5'- gGCGGcGGgcGUCCcCGCGCGGacgcccaccGGCCa -3' miRNA: 3'- -UGCC-CCuuCGGGuGCGCGCCcu-------CUGG- -5' |
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5597 | 3' | -62.2 | NC_001806.1 | + | 31583 | 0.66 | 0.651434 |
Target: 5'- cGCGGGGAuGCgUggGaGUGGGGGugCg -3' miRNA: 3'- -UGCCCCUuCGgGugCgCGCCCUCugG- -5' |
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5597 | 3' | -62.2 | NC_001806.1 | + | 23579 | 0.66 | 0.651434 |
Target: 5'- cACGGcGgcGCCCGCGgccgcCGCccuGGAGGCCu -3' miRNA: 3'- -UGCCcCuuCGGGUGC-----GCGc--CCUCUGG- -5' |
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5597 | 3' | -62.2 | NC_001806.1 | + | 113847 | 0.66 | 0.650461 |
Target: 5'- uGCGGcGcGcGGCCCuggaccgccaucGCgacugccggguuaGCGCGGGGGGCCa -3' miRNA: 3'- -UGCC-C-CuUCGGG------------UG-------------CGCGCCCUCUGG- -5' |
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5597 | 3' | -62.2 | NC_001806.1 | + | 31374 | 0.66 | 0.641697 |
Target: 5'- -aGGGGggGgUCGgGCGCuGGGuggucucuGGCCg -3' miRNA: 3'- ugCCCCuuCgGGUgCGCG-CCCu-------CUGG- -5' |
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5597 | 3' | -62.2 | NC_001806.1 | + | 23951 | 0.66 | 0.641697 |
Target: 5'- cUGGGGggGCcgccggagugguCCGCcgaGCGCGGcGGGCUg -3' miRNA: 3'- uGCCCCuuCG------------GGUG---CGCGCCcUCUGG- -5' |
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5597 | 3' | -62.2 | NC_001806.1 | + | 62620 | 0.66 | 0.641697 |
Target: 5'- -aGGGGGugggugGGCuCCAgGCaCGGGAGcGCCu -3' miRNA: 3'- ugCCCCU------UCG-GGUgCGcGCCCUC-UGG- -5' |
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5597 | 3' | -62.2 | NC_001806.1 | + | 66520 | 0.66 | 0.641697 |
Target: 5'- uUGGGGAuuggcggccaGGCCCGCGa--GGGGGAa- -3' miRNA: 3'- uGCCCCU----------UCGGGUGCgcgCCCUCUgg -5' |
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5597 | 3' | -62.2 | NC_001806.1 | + | 139824 | 0.66 | 0.641697 |
Target: 5'- uACGGGGccggGAGCgCCAggaccgccugcCGCGC-GGAGGCg -3' miRNA: 3'- -UGCCCC----UUCG-GGU-----------GCGCGcCCUCUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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