miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5597 3' -62.2 NC_001806.1 + 75506 0.66 0.6815
Target:  5'- cGCGGGaAAGCCuCGCGgGCcacgagggcagguucGGGGGCCu -3'
miRNA:   3'- -UGCCCcUUCGG-GUGCgCGc--------------CCUCUGG- -5'
5597 3' -62.2 NC_001806.1 + 117883 0.76 0.193488
Target:  5'- gGCGGGGGccgAGCCCGugaGCGCGcGGAGAa- -3'
miRNA:   3'- -UGCCCCU---UCGGGUg--CGCGC-CCUCUgg -5'
5597 3' -62.2 NC_001806.1 + 119732 0.76 0.19813
Target:  5'- cGCGgauGGGAAGCCCugGCcgGCGGcGAcGGCCg -3'
miRNA:   3'- -UGC---CCCUUCGGGugCG--CGCC-CU-CUGG- -5'
5597 3' -62.2 NC_001806.1 + 132686 0.75 0.202869
Target:  5'- cUGGGGGccuGGCCCGCG-GUGGG-GGCCa -3'
miRNA:   3'- uGCCCCU---UCGGGUGCgCGCCCuCUGG- -5'
5597 3' -62.2 NC_001806.1 + 92924 0.75 0.224903
Target:  5'- gGCGGGGcgggccuggaggccgGGGCCCGCGCGCugauGGAcGCCg -3'
miRNA:   3'- -UGCCCC---------------UUCGGGUGCGCGc---CCUcUGG- -5'
5597 3' -62.2 NC_001806.1 + 151428 0.74 0.233406
Target:  5'- -aGGcGGggGCCCAcCG-GCGGGGGGCg -3'
miRNA:   3'- ugCC-CCuuCGGGU-GCgCGCCCUCUGg -5'
5597 3' -62.2 NC_001806.1 + 27330 0.74 0.233406
Target:  5'- uCGGGGcccGGCCCAuUGgGCGGGAGuuACCg -3'
miRNA:   3'- uGCCCCu--UCGGGU-GCgCGCCCUC--UGG- -5'
5597 3' -62.2 NC_001806.1 + 96373 0.74 0.233406
Target:  5'- uGCGccaGGgcGCCCcCGCGCGGGGGcGCCg -3'
miRNA:   3'- -UGCc--CCuuCGGGuGCGCGCCCUC-UGG- -5'
5597 3' -62.2 NC_001806.1 + 47980 0.74 0.250076
Target:  5'- cCGGGGAgugccaaucgaGGCCCGCcgGCuGCGGGAGcuaaACCa -3'
miRNA:   3'- uGCCCCU-----------UCGGGUG--CG-CGCCCUC----UGG- -5'
5597 3' -62.2 NC_001806.1 + 51132 0.77 0.155846
Target:  5'- uCGGGGAGGCgCGCGaccggGCuGGGAGGCCc -3'
miRNA:   3'- uGCCCCUUCGgGUGCg----CG-CCCUCUGG- -5'
5597 3' -62.2 NC_001806.1 + 24359 0.77 0.152099
Target:  5'- cCGGGGGucUUCGCGCGCGuGGAGGCCg -3'
miRNA:   3'- uGCCCCUucGGGUGCGCGC-CCUCUGG- -5'
5597 3' -62.2 NC_001806.1 + 37796 0.78 0.144849
Target:  5'- gGCGcGGggGUCCGCGgGCGGGGGGgCa -3'
miRNA:   3'- -UGCcCCuuCGGGUGCgCGCCCUCUgG- -5'
5597 3' -62.2 NC_001806.1 + 3314 0.83 0.060035
Target:  5'- gGCGGGGAagcggGGCCCGCGggucccuccggcCGCGGGGGGCUg -3'
miRNA:   3'- -UGCCCCU-----UCGGGUGC------------GCGCCCUCUGG- -5'
5597 3' -62.2 NC_001806.1 + 147794 0.81 0.083446
Target:  5'- gGCGGGGGgcggAGCCUggcauggGCGcCGCGGGGGGCCu -3'
miRNA:   3'- -UGCCCCU----UCGGG-------UGC-GCGCCCUCUGG- -5'
5597 3' -62.2 NC_001806.1 + 20712 0.8 0.094927
Target:  5'- uCGGGGuGGGCCCGCcggggGgGCGGGGGGCCg -3'
miRNA:   3'- uGCCCC-UUCGGGUG-----CgCGCCCUCUGG- -5'
5597 3' -62.2 NC_001806.1 + 6077 0.8 0.099825
Target:  5'- cCGGGGGcgGGCCCGgGCgGCGGGGGGCg -3'
miRNA:   3'- uGCCCCU--UCGGGUgCG-CGCCCUCUGg -5'
5597 3' -62.2 NC_001806.1 + 2522 0.8 0.107622
Target:  5'- gGCGGGGGcgGGCCCGgcgcacCGCGCGGcgaucGAGGCCa -3'
miRNA:   3'- -UGCCCCU--UCGGGU------GCGCGCC-----CUCUGG- -5'
5597 3' -62.2 NC_001806.1 + 52590 0.79 0.110346
Target:  5'- cCGGGGggGCaUCGCGCGgGGGgugGGACCu -3'
miRNA:   3'- uGCCCCuuCG-GGUGCGCgCCC---UCUGG- -5'
5597 3' -62.2 NC_001806.1 + 45286 0.79 0.113134
Target:  5'- gGCGGGaGAcgcgGGCCCGCGCG-GGGAG-CCg -3'
miRNA:   3'- -UGCCC-CU----UCGGGUGCGCgCCCUCuGG- -5'
5597 3' -62.2 NC_001806.1 + 150090 0.79 0.124957
Target:  5'- -aGGGGAggcaGGCCCAC-CGCGGGGcGGCCc -3'
miRNA:   3'- ugCCCCU----UCGGGUGcGCGCCCU-CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.