miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5597 5' -48.8 NC_001806.1 + 110000 0.66 0.999377
Target:  5'- aGUAGgcccgGUUUCGguccgUUGUGACGUaaaacacaacGUCCCg -3'
miRNA:   3'- -CGUCa----UAGAGCa----GAUACUGCG----------UAGGG- -5'
5597 5' -48.8 NC_001806.1 + 130179 0.67 0.998116
Target:  5'- uGCuGUGUCgccgguucaaggggCG-CUGUGACGCGUCg- -3'
miRNA:   3'- -CGuCAUAGa-------------GCaGAUACUGCGUAGgg -5'
5597 5' -48.8 NC_001806.1 + 12998 0.68 0.996005
Target:  5'- aGCAGggugCUCGUgUAUGGgGCcuugggCCCg -3'
miRNA:   3'- -CGUCaua-GAGCAgAUACUgCGua----GGG- -5'
5597 5' -48.8 NC_001806.1 + 132789 0.68 0.995321
Target:  5'- gGCGGUGg--CG-Cg--GugGCAUCCCg -3'
miRNA:   3'- -CGUCAUagaGCaGauaCugCGUAGGG- -5'
5597 5' -48.8 NC_001806.1 + 78393 0.68 0.995321
Target:  5'- gGCGGUGag-CGUcCUcgGGCGCAugugucUCCCa -3'
miRNA:   3'- -CGUCAUagaGCA-GAuaCUGCGU------AGGG- -5'
5597 5' -48.8 NC_001806.1 + 148911 0.69 0.992685
Target:  5'- gGCGGaGUCgUCGUCaugGUGGuCGgCGUCCCc -3'
miRNA:   3'- -CGUCaUAG-AGCAGa--UACU-GC-GUAGGG- -5'
5597 5' -48.8 NC_001806.1 + 142123 0.69 0.99258
Target:  5'- aGUGGgGUCgucggCGUCUgcuuuuuGUGGCGgCGUCCCg -3'
miRNA:   3'- -CGUCaUAGa----GCAGA-------UACUGC-GUAGGG- -5'
5597 5' -48.8 NC_001806.1 + 135915 0.7 0.985617
Target:  5'- aCGGUGUCguuaaugUCGcCUacGUGGCGCAUgCCCu -3'
miRNA:   3'- cGUCAUAG-------AGCaGA--UACUGCGUA-GGG- -5'
5597 5' -48.8 NC_001806.1 + 98646 0.71 0.971976
Target:  5'- cGUGGUAUCggcCGUgUcgGGCGUGUCCUc -3'
miRNA:   3'- -CGUCAUAGa--GCAgAuaCUGCGUAGGG- -5'
5597 5' -48.8 NC_001806.1 + 115694 1.15 0.006785
Target:  5'- cGCAGUAUCUCGUCUAUGACGCAUCCCc -3'
miRNA:   3'- -CGUCAUAGAGCAGAUACUGCGUAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.