miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5598 3' -58.4 NC_001806.1 + 115245 0.66 0.811401
Target:  5'- cGCCgGGGGCGUUUacgCG-GGGGACa -3'
miRNA:   3'- aCGGaCCUCGCGGAcuaGCaCCUCUG- -5'
5598 3' -58.4 NC_001806.1 + 51113 0.66 0.811401
Target:  5'- cGcCCUGcGGGCGCacguGUCGgGGAGGCg -3'
miRNA:   3'- aC-GGAC-CUCGCGgac-UAGCaCCUCUG- -5'
5598 3' -58.4 NC_001806.1 + 149321 0.66 0.810531
Target:  5'- aGUaaGGGGgGCCUGcguaugaGUCaGUGGGGACc -3'
miRNA:   3'- aCGgaCCUCgCGGAC-------UAG-CACCUCUG- -5'
5598 3' -58.4 NC_001806.1 + 30412 0.66 0.793707
Target:  5'- gGCUcgGGGGgGCCgGG-CGUGGAGGg -3'
miRNA:   3'- aCGGa-CCUCgCGGaCUaGCACCUCUg -5'
5598 3' -58.4 NC_001806.1 + 28319 0.66 0.783725
Target:  5'- cGCCauguUGGGGCGCCauguuaggGggCGUGGAaccccguGACa -3'
miRNA:   3'- aCGG----ACCUCGCGGa-------CuaGCACCU-------CUG- -5'
5598 3' -58.4 NC_001806.1 + 120871 0.66 0.775437
Target:  5'- -cCCUGGcGcCGCCUGGUCccccGGGGACc -3'
miRNA:   3'- acGGACCuC-GCGGACUAGca--CCUCUG- -5'
5598 3' -58.4 NC_001806.1 + 77116 0.66 0.775437
Target:  5'- cGCCaaGAGCGCCgagcgggccggGGcCGUGGAGGa -3'
miRNA:   3'- aCGGacCUCGCGGa----------CUaGCACCUCUg -5'
5598 3' -58.4 NC_001806.1 + 28223 0.66 0.775437
Target:  5'- cGCCauauuggGGGGCGCCauGUUG-GGGGACc -3'
miRNA:   3'- aCGGa------CCUCGCGGacUAGCaCCUCUG- -5'
5598 3' -58.4 NC_001806.1 + 132684 0.66 0.766108
Target:  5'- -uCCUGGGG-GCCUGGcccgCGgUGGGGGCc -3'
miRNA:   3'- acGGACCUCgCGGACUa---GC-ACCUCUG- -5'
5598 3' -58.4 NC_001806.1 + 3937 0.66 0.766108
Target:  5'- gGCCUGGuccAGCGCCacGUCcccGGGGACc -3'
miRNA:   3'- aCGGACC---UCGCGGacUAGca-CCUCUG- -5'
5598 3' -58.4 NC_001806.1 + 80690 0.66 0.766108
Target:  5'- uUGUCUGGGGUGUCU--UCGUGGGc-- -3'
miRNA:   3'- -ACGGACCUCGCGGAcuAGCACCUcug -5'
5598 3' -58.4 NC_001806.1 + 131974 0.67 0.717883
Target:  5'- gGcCCUGGAGCGCCaGAcCGggccGGuGGCc -3'
miRNA:   3'- aC-GGACCUCGCGGaCUaGCa---CCuCUG- -5'
5598 3' -58.4 NC_001806.1 + 109541 0.67 0.717883
Target:  5'- aGCCgggGGAgguGCGCCUGGgccagggCGaacacguaUGGGGACg -3'
miRNA:   3'- aCGGa--CCU---CGCGGACUa------GC--------ACCUCUG- -5'
5598 3' -58.4 NC_001806.1 + 85969 0.67 0.716896
Target:  5'- gGCUUGGAcGCGCCUcccggggGGUCGgcaGGcGACg -3'
miRNA:   3'- aCGGACCU-CGCGGA-------CUAGCa--CCuCUG- -5'
5598 3' -58.4 NC_001806.1 + 57891 0.68 0.698023
Target:  5'- cGCCccccGAGCGCCcccgcuUGGUCGUGGGaguGACc -3'
miRNA:   3'- aCGGac--CUCGCGG------ACUAGCACCU---CUG- -5'
5598 3' -58.4 NC_001806.1 + 94297 0.68 0.698023
Target:  5'- aGCCUGGAGaCGUUcgcGAcCGcgGGAGACg -3'
miRNA:   3'- aCGGACCUC-GCGGa--CUaGCa-CCUCUG- -5'
5598 3' -58.4 NC_001806.1 + 94509 0.68 0.677944
Target:  5'- cGCgCUGGAGCGCguucggGAguuuaUgGUGGGGGCg -3'
miRNA:   3'- aCG-GACCUCGCGga----CU-----AgCACCUCUG- -5'
5598 3' -58.4 NC_001806.1 + 70511 0.68 0.677944
Target:  5'- cGCCUGGGGC-CCUGGcccccCGaggccaugGGGGACg -3'
miRNA:   3'- aCGGACCUCGcGGACUa----GCa-------CCUCUG- -5'
5598 3' -58.4 NC_001806.1 + 2792 0.68 0.677944
Target:  5'- gGCCcGGGGCGCCgcgGGcUGggcGGGGGCg -3'
miRNA:   3'- aCGGaCCUCGCGGa--CUaGCa--CCUCUG- -5'
5598 3' -58.4 NC_001806.1 + 50488 0.68 0.667846
Target:  5'- cUGCCccUGGGaaGCCccgcGGUCGUGGGGGCc -3'
miRNA:   3'- -ACGG--ACCUcgCGGa---CUAGCACCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.