miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5598 5' -62.7 NC_001806.1 + 19360 0.66 0.656868
Target:  5'- cCGGgggGcCCuACGGCCACCGauGCgGGg -3'
miRNA:   3'- -GCCa--CaGG-UGCCGGUGGCggCGgUCg -5'
5598 5' -62.7 NC_001806.1 + 39564 0.66 0.656868
Target:  5'- aGGUGgCCGgGGCCACCaucUUGUgGGCg -3'
miRNA:   3'- gCCACaGGUgCCGGUGGc--GGCGgUCG- -5'
5598 5' -62.7 NC_001806.1 + 5678 0.66 0.656868
Target:  5'- gCGGguggGUCCGCGccCCGCC-CCGCaUGGCa -3'
miRNA:   3'- -GCCa---CAGGUGCc-GGUGGcGGCG-GUCG- -5'
5598 5' -62.7 NC_001806.1 + 37799 0.66 0.656868
Target:  5'- gCGGggGUCCGCGGgCggggggGCaaUCGCCAGCg -3'
miRNA:   3'- -GCCa-CAGGUGCCgG------UGgcGGCGGUCG- -5'
5598 5' -62.7 NC_001806.1 + 64875 0.66 0.647157
Target:  5'- cCGGg--CCACGGCgggaucgGCCGCaagaccagCGCCGGCc -3'
miRNA:   3'- -GCCacaGGUGCCGg------UGGCG--------GCGGUCG- -5'
5598 5' -62.7 NC_001806.1 + 26424 0.66 0.647157
Target:  5'- cCGG-GcCCACGGgCGCCGucccaaCCGCaCAGUc -3'
miRNA:   3'- -GCCaCaGGUGCCgGUGGC------GGCG-GUCG- -5'
5598 5' -62.7 NC_001806.1 + 92349 0.66 0.647157
Target:  5'- aCGGccggCCagACGGCCcCCGCCGagagCAGCu -3'
miRNA:   3'- -GCCaca-GG--UGCCGGuGGCGGCg---GUCG- -5'
5598 5' -62.7 NC_001806.1 + 109283 0.66 0.647157
Target:  5'- uCGGUGUuguuUgGCGGaggCGCCGgcgaaaCGCCAGCg -3'
miRNA:   3'- -GCCACA----GgUGCCg--GUGGCg-----GCGGUCG- -5'
5598 5' -62.7 NC_001806.1 + 73318 0.66 0.644241
Target:  5'- cCGcGUGUUCGCGGCuCACCaucagcgccuuacgGUCGCCGu- -3'
miRNA:   3'- -GC-CACAGGUGCCG-GUGG--------------CGGCGGUcg -5'
5598 5' -62.7 NC_001806.1 + 96738 0.66 0.638407
Target:  5'- aCGGUGgugcaguucgagcagCCGC-GCCGCUGCCcgacCCGGCc -3'
miRNA:   3'- -GCCACa--------------GGUGcCGGUGGCGGc---GGUCG- -5'
5598 5' -62.7 NC_001806.1 + 22808 0.66 0.637435
Target:  5'- uCGaGUG-CC-UGGCCGCCuGCCGCgGGa -3'
miRNA:   3'- -GC-CACaGGuGCCGGUGG-CGGCGgUCg -5'
5598 5' -62.7 NC_001806.1 + 74185 0.66 0.637435
Target:  5'- -cGUGgCUuCGGCCGCCGUCGugcccgugguCCAGCu -3'
miRNA:   3'- gcCACaGGuGCCGGUGGCGGC----------GGUCG- -5'
5598 5' -62.7 NC_001806.1 + 56594 0.66 0.636463
Target:  5'- aGGUGaCCACGGgCACCcagacguuuucggGCCgcgcgacccugGCCGGUg -3'
miRNA:   3'- gCCACaGGUGCCgGUGG-------------CGG-----------CGGUCG- -5'
5598 5' -62.7 NC_001806.1 + 19649 0.66 0.627709
Target:  5'- aGGaagcgGUCCacgcaACGGUCGCCGCCGgUcGCc -3'
miRNA:   3'- gCCa----CAGG-----UGCCGGUGGCGGCgGuCG- -5'
5598 5' -62.7 NC_001806.1 + 61430 0.66 0.627709
Target:  5'- ----uUCgAUGGCCGCCagcGCCGCCGGg -3'
miRNA:   3'- gccacAGgUGCCGGUGG---CGGCGGUCg -5'
5598 5' -62.7 NC_001806.1 + 151706 0.66 0.626737
Target:  5'- gGGcUGcCCGCcGCCACCGCUuuaaaggGCCGcGCg -3'
miRNA:   3'- gCC-ACaGGUGcCGGUGGCGG-------CGGU-CG- -5'
5598 5' -62.7 NC_001806.1 + 4856 0.66 0.621875
Target:  5'- uCGGgaucGUCCggACGGCCuccucuaccauggagGCCaGCagaGCCAGCu -3'
miRNA:   3'- -GCCa---CAGG--UGCCGG---------------UGG-CGg--CGGUCG- -5'
5598 5' -62.7 NC_001806.1 + 20070 0.66 0.617987
Target:  5'- cCGcGUGcUCCGCaGCCGCucccgucguuCGUgGCCGGCg -3'
miRNA:   3'- -GC-CAC-AGGUGcCGGUG----------GCGgCGGUCG- -5'
5598 5' -62.7 NC_001806.1 + 3364 0.66 0.617987
Target:  5'- cCGGg--CCcCGGCCAgCCccgggacgGCCGCCAGg -3'
miRNA:   3'- -GCCacaGGuGCCGGU-GG--------CGGCGGUCg -5'
5598 5' -62.7 NC_001806.1 + 144138 0.66 0.617987
Target:  5'- cCGGccccCCGCGaGuCCAcCCGCCGgCCGGCu -3'
miRNA:   3'- -GCCaca-GGUGC-C-GGU-GGCGGC-GGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.