miRNA display CGI


Results 21 - 40 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5598 5' -62.7 NC_001806.1 + 144138 0.66 0.617987
Target:  5'- cCGGccccCCGCGaGuCCAcCCGCCGgCCGGCu -3'
miRNA:   3'- -GCCaca-GGUGC-C-GGU-GGCGGC-GGUCG- -5'
5598 5' -62.7 NC_001806.1 + 20070 0.66 0.617987
Target:  5'- cCGcGUGcUCCGCaGCCGCucccgucguuCGUgGCCGGCg -3'
miRNA:   3'- -GC-CAC-AGGUGcCGGUG----------GCGgCGGUCG- -5'
5598 5' -62.7 NC_001806.1 + 100534 0.66 0.616043
Target:  5'- uGGacUCCGgGGCCccguucuuauacCCGCgCGCCGGCg -3'
miRNA:   3'- gCCacAGGUgCCGGu-----------GGCG-GCGGUCG- -5'
5598 5' -62.7 NC_001806.1 + 147549 0.66 0.615071
Target:  5'- cCGGcccccccgagCCGCGcGCCACCGUCGCacgcgccCGGCa -3'
miRNA:   3'- -GCCaca-------GGUGC-CGGUGGCGGCG-------GUCG- -5'
5598 5' -62.7 NC_001806.1 + 22097 0.66 0.608274
Target:  5'- aCGGcGgCCugGGCgACaGCCGCCcgGGCc -3'
miRNA:   3'- -GCCaCaGGugCCGgUGgCGGCGG--UCG- -5'
5598 5' -62.7 NC_001806.1 + 126283 0.66 0.608274
Target:  5'- uCGGgacaUUCACGGCUACCugGCC-CCAGUc -3'
miRNA:   3'- -GCCac--AGGUGCCGGUGG--CGGcGGUCG- -5'
5598 5' -62.7 NC_001806.1 + 96208 0.66 0.608274
Target:  5'- --cUGUCCGCugguGGCCAUCGUCGagAGCg -3'
miRNA:   3'- gccACAGGUG----CCGGUGGCGGCggUCG- -5'
5598 5' -62.7 NC_001806.1 + 20350 0.66 0.608274
Target:  5'- gCGGgcgGccCUugGGCCGcCCGCCGucccguuggucCCGGCg -3'
miRNA:   3'- -GCCa--Ca-GGugCCGGU-GGCGGC-----------GGUCG- -5'
5598 5' -62.7 NC_001806.1 + 98019 0.66 0.608274
Target:  5'- ---cG-CCuCGGCCACCGUgGgCCGGCg -3'
miRNA:   3'- gccaCaGGuGCCGGUGGCGgC-GGUCG- -5'
5598 5' -62.7 NC_001806.1 + 91397 0.66 0.598577
Target:  5'- uGGUGcCCGgguucgaggguCGGcCCACCGCgccccuCGUCGGCg -3'
miRNA:   3'- gCCACaGGU-----------GCC-GGUGGCG------GCGGUCG- -5'
5598 5' -62.7 NC_001806.1 + 148957 0.66 0.598577
Target:  5'- uCGGUcUCCGCcucagaGUCGCUGCUGuCCGGCa -3'
miRNA:   3'- -GCCAcAGGUGc-----CGGUGGCGGC-GGUCG- -5'
5598 5' -62.7 NC_001806.1 + 136260 0.66 0.598577
Target:  5'- gGGUcUCgCACGaGCCAgUCGCC-CCGGCg -3'
miRNA:   3'- gCCAcAG-GUGC-CGGU-GGCGGcGGUCG- -5'
5598 5' -62.7 NC_001806.1 + 150669 0.66 0.598577
Target:  5'- cCGG-GcCCcgccgcgcugGCGGCCGCCGaUgGCCAGUc -3'
miRNA:   3'- -GCCaCaGG----------UGCCGGUGGC-GgCGGUCG- -5'
5598 5' -62.7 NC_001806.1 + 56815 0.67 0.588903
Target:  5'- gCGGUGgucgcCCcCGGgcccgccaacaCCGCCGCgGCCAGg -3'
miRNA:   3'- -GCCACa----GGuGCC-----------GGUGGCGgCGGUCg -5'
5598 5' -62.7 NC_001806.1 + 84099 0.67 0.588903
Target:  5'- gCGGagGcCCGuCGcGCCACgGuCCGCCAGUc -3'
miRNA:   3'- -GCCa-CaGGU-GC-CGGUGgC-GGCGGUCG- -5'
5598 5' -62.7 NC_001806.1 + 67764 0.67 0.588903
Target:  5'- ------aCGCGGCUACCGCCuCCGGUg -3'
miRNA:   3'- gccacagGUGCCGGUGGCGGcGGUCG- -5'
5598 5' -62.7 NC_001806.1 + 114144 0.67 0.588903
Target:  5'- uGGUgGUCC-CGGagAUCGCCcCCGGCg -3'
miRNA:   3'- gCCA-CAGGuGCCggUGGCGGcGGUCG- -5'
5598 5' -62.7 NC_001806.1 + 43119 0.67 0.588903
Target:  5'- aCGGgaGUCC-CGGCCGcCCGCCucucCCcGCg -3'
miRNA:   3'- -GCCa-CAGGuGCCGGU-GGCGGc---GGuCG- -5'
5598 5' -62.7 NC_001806.1 + 70828 0.67 0.588903
Target:  5'- gCGGcGUCUGuCGGCCugcuaucaaGCCGCgGCgCGGCc -3'
miRNA:   3'- -GCCaCAGGU-GCCGG---------UGGCGgCG-GUCG- -5'
5598 5' -62.7 NC_001806.1 + 111062 0.67 0.586971
Target:  5'- gGGaUGUCCguguuuuugggaggcACGGCCcugugugccuuguucGCCGCCGCCc-- -3'
miRNA:   3'- gCC-ACAGG---------------UGCCGG---------------UGGCGGCGGucg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.