miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5598 5' -62.7 NC_001806.1 + 1374 0.84 0.047357
Target:  5'- ----cUCCACGGCCcccGCCGCCGCCAGCa -3'
miRNA:   3'- gccacAGGUGCCGG---UGGCGGCGGUCG- -5'
5598 5' -62.7 NC_001806.1 + 1399 0.68 0.50376
Target:  5'- aCGGUGccgCUGCGGCCcgugGCCGagGcCCAGCg -3'
miRNA:   3'- -GCCACa--GGUGCCGG----UGGCggC-GGUCG- -5'
5598 5' -62.7 NC_001806.1 + 1702 0.78 0.127191
Target:  5'- uCGGUgGUCCccgaGGCCGCCGCCcggccguccagcGCCGGCa -3'
miRNA:   3'- -GCCA-CAGGug--CCGGUGGCGG------------CGGUCG- -5'
5598 5' -62.7 NC_001806.1 + 1938 0.67 0.541069
Target:  5'- gCGGcgcagGUCC-CGcGCCGCCG--GCCAGCg -3'
miRNA:   3'- -GCCa----CAGGuGC-CGGUGGCggCGGUCG- -5'
5598 5' -62.7 NC_001806.1 + 2061 0.79 0.101683
Target:  5'- aCGGUGUugaCCACGaugaGCCGCCgGUCGCCGGCg -3'
miRNA:   3'- -GCCACA---GGUGC----CGGUGG-CGGCGGUCG- -5'
5598 5' -62.7 NC_001806.1 + 2225 0.74 0.223177
Target:  5'- -cGUGUCCGgcccgcacagccgguUGGCCAggGCCGCCAGCa -3'
miRNA:   3'- gcCACAGGU---------------GCCGGUggCGGCGGUCG- -5'
5598 5' -62.7 NC_001806.1 + 2299 0.72 0.310307
Target:  5'- cCGGcgGcCCccccgaGGCC-CCGCCGCCGGCc -3'
miRNA:   3'- -GCCa-CaGGug----CCGGuGGCGGCGGUCG- -5'
5598 5' -62.7 NC_001806.1 + 2481 0.67 0.579257
Target:  5'- gGGUuaucGUCguCGucGCCGCCGCCGCacgCGGCc -3'
miRNA:   3'- gCCA----CAGguGC--CGGUGGCGGCG---GUCG- -5'
5598 5' -62.7 NC_001806.1 + 2611 0.67 0.560073
Target:  5'- gCGGgugGUCCGugagcuCGGCCACgGCgCGCgGGg -3'
miRNA:   3'- -GCCa--CAGGU------GCCGGUGgCG-GCGgUCg -5'
5598 5' -62.7 NC_001806.1 + 2653 0.71 0.360478
Target:  5'- aGGccUCCAgGGCgGCgGCCGCgGGCg -3'
miRNA:   3'- gCCacAGGUgCCGgUGgCGGCGgUCG- -5'
5598 5' -62.7 NC_001806.1 + 2683 0.76 0.183109
Target:  5'- cCGuGUGg-CugGGCCccgggggcuGCCGCCGCCAGCc -3'
miRNA:   3'- -GC-CACagGugCCGG---------UGGCGGCGGUCG- -5'
5598 5' -62.7 NC_001806.1 + 2774 0.69 0.476526
Target:  5'- gCGGgccugcgCCGCGGCgGCCcggggcGCCGCgGGCu -3'
miRNA:   3'- -GCCaca----GGUGCCGgUGG------CGGCGgUCG- -5'
5598 5' -62.7 NC_001806.1 + 2917 0.69 0.458782
Target:  5'- uCGGgggUCGCgGGCCGCCGCCuCCGGg -3'
miRNA:   3'- -GCCacaGGUG-CCGGUGGCGGcGGUCg -5'
5598 5' -62.7 NC_001806.1 + 2991 0.72 0.29049
Target:  5'- gCGG-GgagGCGGCgGCgGCCGCCAGCg -3'
miRNA:   3'- -GCCaCaggUGCCGgUGgCGGCGGUCG- -5'
5598 5' -62.7 NC_001806.1 + 3023 0.9 0.019553
Target:  5'- gCGGcGUCCGgugcgcUGGCCGCCGCCGCCAGCa -3'
miRNA:   3'- -GCCaCAGGU------GCCGGUGGCGGCGGUCG- -5'
5598 5' -62.7 NC_001806.1 + 3071 0.69 0.449174
Target:  5'- uGGUugucaaacagcagGUCCGCGGCgGCgGCgGCC-GCg -3'
miRNA:   3'- gCCA-------------CAGGUGCCGgUGgCGgCGGuCG- -5'
5598 5' -62.7 NC_001806.1 + 3179 0.78 0.133614
Target:  5'- aCGGcGgCCACGGCggccuCGCUGCCGCCGGCc -3'
miRNA:   3'- -GCCaCaGGUGCCG-----GUGGCGGCGGUCG- -5'
5598 5' -62.7 NC_001806.1 + 3364 0.66 0.617987
Target:  5'- cCGGg--CCcCGGCCAgCCccgggacgGCCGCCAGg -3'
miRNA:   3'- -GCCacaGGuGCCGGU-GG--------CGGCGGUCg -5'
5598 5' -62.7 NC_001806.1 + 3449 0.68 0.522286
Target:  5'- aGGcacUCgACGGCCA-CGCgGCCGGCc -3'
miRNA:   3'- gCCac-AGgUGCCGGUgGCGgCGGUCG- -5'
5598 5' -62.7 NC_001806.1 + 3787 0.79 0.106899
Target:  5'- gCGGcucaUGgCCACGGCgGCCGCCGCguGCg -3'
miRNA:   3'- -GCC----ACaGGUGCCGgUGGCGGCGguCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.