miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5599 5' -60.4 NC_001806.1 + 2768 0.66 0.734294
Target:  5'- --gCGCGggcgggccugcGCCGCGG-CGGCCCG-GGGc -3'
miRNA:   3'- gaaGCGC-----------CGGUGCCgGUUGGGCaCCC- -5'
5599 5' -60.4 NC_001806.1 + 23540 0.66 0.734294
Target:  5'- cCUggGCGGCUgGCGGCggCAGCCCccGGGg -3'
miRNA:   3'- -GAagCGCCGG-UGCCG--GUUGGGcaCCC- -5'
5599 5' -60.4 NC_001806.1 + 84109 0.66 0.734294
Target:  5'- -gUCGC-GCCACGGUCcGCCaguccUGGGa -3'
miRNA:   3'- gaAGCGcCGGUGCCGGuUGGgc---ACCC- -5'
5599 5' -60.4 NC_001806.1 + 22164 0.66 0.733353
Target:  5'- gUUCGaGGCCucgggcgccccgGCGGCCGugugggcGCCCGagcUGGGc -3'
miRNA:   3'- gAAGCgCCGG------------UGCCGGU-------UGGGC---ACCC- -5'
5599 5' -60.4 NC_001806.1 + 2509 0.66 0.724843
Target:  5'- --aCGCGGCCugGGCgGcgggggcggGCCCGg--- -3'
miRNA:   3'- gaaGCGCCGGugCCGgU---------UGGGCaccc -5'
5599 5' -60.4 NC_001806.1 + 119622 0.66 0.724843
Target:  5'- gCUUUGUGGCCccaGcGCCccacgGGCCCG-GGGg -3'
miRNA:   3'- -GAAGCGCCGGug-C-CGG-----UUGGGCaCCC- -5'
5599 5' -60.4 NC_001806.1 + 113295 0.66 0.724843
Target:  5'- --cCGgGGggggacguucCCcCGGCCGGCCCG-GGGg -3'
miRNA:   3'- gaaGCgCC----------GGuGCCGGUUGGGCaCCC- -5'
5599 5' -60.4 NC_001806.1 + 14053 0.67 0.718183
Target:  5'- aUUgGgGGCCGgGGCCAcggauuuccugguuaGCCCGguguuguUGGGu -3'
miRNA:   3'- gAAgCgCCGGUgCCGGU---------------UGGGC-------ACCC- -5'
5599 5' -60.4 NC_001806.1 + 83231 0.67 0.715318
Target:  5'- --aCGUGGUCACcGCCcccucaagGGCCCGcGGGg -3'
miRNA:   3'- gaaGCGCCGGUGcCGG--------UUGGGCaCCC- -5'
5599 5' -60.4 NC_001806.1 + 111663 0.67 0.705727
Target:  5'- --cCGCGGCCAUGguGCCGACC---GGGu -3'
miRNA:   3'- gaaGCGCCGGUGC--CGGUUGGgcaCCC- -5'
5599 5' -60.4 NC_001806.1 + 86124 0.67 0.705727
Target:  5'- -cUCGCGGgUCugGGCCAcgAUCaCGUacGGGa -3'
miRNA:   3'- gaAGCGCC-GGugCCGGU--UGG-GCA--CCC- -5'
5599 5' -60.4 NC_001806.1 + 106309 0.67 0.705727
Target:  5'- --aCGUGGCgACGGCgAgccACCCGagcGGGc -3'
miRNA:   3'- gaaGCGCCGgUGCCGgU---UGGGCa--CCC- -5'
5599 5' -60.4 NC_001806.1 + 89750 0.67 0.702839
Target:  5'- ---aGCGGCCACGcccaCCGGCUgaugacgcgcggggCGUGGGa -3'
miRNA:   3'- gaagCGCCGGUGCc---GGUUGG--------------GCACCC- -5'
5599 5' -60.4 NC_001806.1 + 22782 0.67 0.69608
Target:  5'- --cCGCGcCCA-GGCCGGCCgCGUGGc -3'
miRNA:   3'- gaaGCGCcGGUgCCGGUUGG-GCACCc -5'
5599 5' -60.4 NC_001806.1 + 72508 0.67 0.69608
Target:  5'- -aUCGCgGGCCugGGggAGCCCugcgucggcGUGGGc -3'
miRNA:   3'- gaAGCG-CCGGugCCggUUGGG---------CACCC- -5'
5599 5' -60.4 NC_001806.1 + 50902 0.67 0.69608
Target:  5'- --gCGCGGCCGCGGa--GCaCGUGGa -3'
miRNA:   3'- gaaGCGCCGGUGCCgguUGgGCACCc -5'
5599 5' -60.4 NC_001806.1 + 4287 0.67 0.695112
Target:  5'- --cCGgGGCUgccCGGCCGugaagcgGCCCGUGGc -3'
miRNA:   3'- gaaGCgCCGGu--GCCGGU-------UGGGCACCc -5'
5599 5' -60.4 NC_001806.1 + 27297 0.67 0.695112
Target:  5'- --gCGgGGCC-CGGCCAACCagCGUccgccgagucuucGGGg -3'
miRNA:   3'- gaaGCgCCGGuGCCGGUUGG--GCA-------------CCC- -5'
5599 5' -60.4 NC_001806.1 + 144937 0.67 0.695112
Target:  5'- -cUCGgGGUUaccgccaACGGCCGGCCCccGUGGcGg -3'
miRNA:   3'- gaAGCgCCGG-------UGCCGGUUGGG--CACC-C- -5'
5599 5' -60.4 NC_001806.1 + 122542 0.67 0.686382
Target:  5'- ---gGUGGCCACGuCCAccuugGCCCGUuuuuuGGGg -3'
miRNA:   3'- gaagCGCCGGUGCcGGU-----UGGGCA-----CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.