miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5600 3' -56.2 NC_001806.1 + 3016 0.66 0.914277
Target:  5'- cGCGUCGGCgGCguccggUgCGCUGGCCgCcGCc -3'
miRNA:   3'- -UGCAGUUGaUGa-----AgGCGGCCGG-GaCG- -5'
5600 3' -56.2 NC_001806.1 + 33661 0.66 0.908316
Target:  5'- gUGUCGcggGCcgUCUGCUGGCCCgcgGCc -3'
miRNA:   3'- uGCAGUugaUGa-AGGCGGCCGGGa--CG- -5'
5600 3' -56.2 NC_001806.1 + 92891 0.66 0.908316
Target:  5'- aGCGUgcaGGCUGCggCCGCgUGGUCC-GCg -3'
miRNA:   3'- -UGCAg--UUGAUGaaGGCG-GCCGGGaCG- -5'
5600 3' -56.2 NC_001806.1 + 45457 0.66 0.898293
Target:  5'- cUGUCAgaucugccagagGCUACUggCUGCCGggcacgccugaacccGCCCUGUg -3'
miRNA:   3'- uGCAGU------------UGAUGAa-GGCGGC---------------CGGGACG- -5'
5600 3' -56.2 NC_001806.1 + 110283 0.66 0.895694
Target:  5'- ---aCAACgacgGCUUCCGUaguaUGGaCCCUGCc -3'
miRNA:   3'- ugcaGUUGa---UGAAGGCG----GCC-GGGACG- -5'
5600 3' -56.2 NC_001806.1 + 20012 0.66 0.895694
Target:  5'- gGCGUCGcgauGCcgACgccgUCCGCuccgaCGGCCCUcuGCg -3'
miRNA:   3'- -UGCAGU----UGa-UGa---AGGCG-----GCCGGGA--CG- -5'
5600 3' -56.2 NC_001806.1 + 38996 0.66 0.889038
Target:  5'- cCGUU-ACggUUUCCGCCGGCCUggaUGUg -3'
miRNA:   3'- uGCAGuUGauGAAGGCGGCCGGG---ACG- -5'
5600 3' -56.2 NC_001806.1 + 17381 0.66 0.889038
Target:  5'- cCGUCGACgcaa---GcCCGGCCCUGUg -3'
miRNA:   3'- uGCAGUUGaugaaggC-GGCCGGGACG- -5'
5600 3' -56.2 NC_001806.1 + 114524 0.66 0.882158
Target:  5'- cACGUgGcgaacGCgcccaAUUUCCccCCGGCCCUGCg -3'
miRNA:   3'- -UGCAgU-----UGa----UGAAGGc-GGCCGGGACG- -5'
5600 3' -56.2 NC_001806.1 + 2009 0.66 0.882158
Target:  5'- gGCGU--GCUGCcgcgacaCCGCgGGCCCgucgGCg -3'
miRNA:   3'- -UGCAguUGAUGaa-----GGCGgCCGGGa---CG- -5'
5600 3' -56.2 NC_001806.1 + 135501 0.66 0.882158
Target:  5'- gACGUCGAUaAUgUCauaGUCGGCCCggaGCa -3'
miRNA:   3'- -UGCAGUUGaUGaAGg--CGGCCGGGa--CG- -5'
5600 3' -56.2 NC_001806.1 + 114925 0.67 0.875056
Target:  5'- gGCGUgGGCUACa-CCGCCgucguGGCCacgGCa -3'
miRNA:   3'- -UGCAgUUGAUGaaGGCGG-----CCGGga-CG- -5'
5600 3' -56.2 NC_001806.1 + 71942 0.67 0.875056
Target:  5'- -aGUgGACgcgcGCgaCCGCgGGCCCUGg -3'
miRNA:   3'- ugCAgUUGa---UGaaGGCGgCCGGGACg -5'
5600 3' -56.2 NC_001806.1 + 58333 0.67 0.875056
Target:  5'- gGCGUUGGCgg---CCGCCuGGCCC-GCc -3'
miRNA:   3'- -UGCAGUUGaugaaGGCGG-CCGGGaCG- -5'
5600 3' -56.2 NC_001806.1 + 104043 0.67 0.875056
Target:  5'- gGCG-CAGCUGCUUcauccCCG-UGGCCCguUGCu -3'
miRNA:   3'- -UGCaGUUGAUGAA-----GGCgGCCGGG--ACG- -5'
5600 3' -56.2 NC_001806.1 + 8764 0.67 0.873609
Target:  5'- uGCGUCGACgccuuaauaccgACUgUUGgCGGCCCaUGCg -3'
miRNA:   3'- -UGCAGUUGa-----------UGAaGGCgGCCGGG-ACG- -5'
5600 3' -56.2 NC_001806.1 + 3187 0.67 0.867738
Target:  5'- cACGgCGGCcucGCUgCCGCCGGCCacgcGCa -3'
miRNA:   3'- -UGCaGUUGa--UGAaGGCGGCCGGga--CG- -5'
5600 3' -56.2 NC_001806.1 + 24262 0.67 0.867738
Target:  5'- gGCGUgCgAGCUGCUgcCCGCCGugcagugcGCCgUGCg -3'
miRNA:   3'- -UGCA-G-UUGAUGAa-GGCGGC--------CGGgACG- -5'
5600 3' -56.2 NC_001806.1 + 4317 0.67 0.867738
Target:  5'- gGCGUCGcgGCcgGCcaCCGCCgcgcgGGCCCgGCg -3'
miRNA:   3'- -UGCAGU--UGa-UGaaGGCGG-----CCGGGaCG- -5'
5600 3' -56.2 NC_001806.1 + 147652 0.67 0.852477
Target:  5'- cGCGUCcGCgggGCgggCgGCCGGCUCcGCc -3'
miRNA:   3'- -UGCAGuUGa--UGaa-GgCGGCCGGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.