miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5600 5' -60.1 NC_001806.1 + 34508 0.66 0.795146
Target:  5'- aGGACaCgGCC-CgGGGGGUGggaGCGCg -3'
miRNA:   3'- -CCUGcG-CGGcGgCCCCCGCaaaUGCG- -5'
5600 5' -60.1 NC_001806.1 + 102347 0.66 0.795146
Target:  5'- gGGACGUcccccgggGCCGCCGGGagcaccccguGGUGcaucaGCGUg -3'
miRNA:   3'- -CCUGCG--------CGGCGGCCC----------CCGCaaa--UGCG- -5'
5600 5' -60.1 NC_001806.1 + 2945 0.66 0.795146
Target:  5'- cGGcCGgGCCggGCCGGGacucuuGCGcUUGCGCc -3'
miRNA:   3'- -CCuGCgCGG--CGGCCCc-----CGCaAAUGCG- -5'
5600 5' -60.1 NC_001806.1 + 20311 0.66 0.795146
Target:  5'- gGGGCGguccCGcCCGCCggccaauggGGGGGCGgcaagGCGg -3'
miRNA:   3'- -CCUGC----GC-GGCGG---------CCCCCGCaaa--UGCg -5'
5600 5' -60.1 NC_001806.1 + 113452 0.66 0.795146
Target:  5'- ----uCGCCGCCGuucgcGGGGCGUUcgACGa -3'
miRNA:   3'- ccugcGCGGCGGC-----CCCCGCAAa-UGCg -5'
5600 5' -60.1 NC_001806.1 + 30573 0.66 0.795146
Target:  5'- -cACGCGUcccccccucgCGCCGGcaggggccaagaGGGCGgcgACGCa -3'
miRNA:   3'- ccUGCGCG----------GCGGCC------------CCCGCaaaUGCG- -5'
5600 5' -60.1 NC_001806.1 + 134522 0.66 0.79428
Target:  5'- gGGugGCGUgGCuuCGGGGGCaGUUcuccaggUACa- -3'
miRNA:   3'- -CCugCGCGgCG--GCCCCCG-CAA-------AUGcg -5'
5600 5' -60.1 NC_001806.1 + 69610 0.66 0.786424
Target:  5'- cGGuCG-GCCuGUCGGGGGgCGUUcuaagccagACGCu -3'
miRNA:   3'- -CCuGCgCGG-CGGCCCCC-GCAAa--------UGCG- -5'
5600 5' -60.1 NC_001806.1 + 22175 0.66 0.786424
Target:  5'- cGGGCGCcCCGgCGGccGUGUggGCGCc -3'
miRNA:   3'- -CCUGCGcGGCgGCCccCGCAaaUGCG- -5'
5600 5' -60.1 NC_001806.1 + 112328 0.66 0.786424
Target:  5'- aGGCGgGCCaccGCCGGGaGGcCGUcgAgGCc -3'
miRNA:   3'- cCUGCgCGG---CGGCCC-CC-GCAaaUgCG- -5'
5600 5' -60.1 NC_001806.1 + 51105 0.66 0.786424
Target:  5'- gGGGC-CGCCGCCcuGcGGGCGc--ACGUg -3'
miRNA:   3'- -CCUGcGCGGCGGc-C-CCCGCaaaUGCG- -5'
5600 5' -60.1 NC_001806.1 + 24342 0.66 0.786424
Target:  5'- cGGGcCGCGUguuCGgcCCGGGGGUcUUcGCGCg -3'
miRNA:   3'- -CCU-GCGCG---GC--GGCCCCCGcAAaUGCG- -5'
5600 5' -60.1 NC_001806.1 + 136532 0.66 0.786424
Target:  5'- uGACGgGCCGCUcGGGcCGcccgGCGCa -3'
miRNA:   3'- cCUGCgCGGCGGcCCCcGCaaa-UGCG- -5'
5600 5' -60.1 NC_001806.1 + 24512 0.66 0.777574
Target:  5'- cGGGcCGUGCUGCCGGcgcuggacggccGGGCG---GCGg -3'
miRNA:   3'- -CCU-GCGCGGCGGCC------------CCCGCaaaUGCg -5'
5600 5' -60.1 NC_001806.1 + 142153 0.66 0.777574
Target:  5'- cGGCGUcCCGUCGcGGGGUGggguccgACGUg -3'
miRNA:   3'- cCUGCGcGGCGGC-CCCCGCaaa----UGCG- -5'
5600 5' -60.1 NC_001806.1 + 22964 0.66 0.768604
Target:  5'- cGACGCGCCccGCCuGcGcGCGUggcUGCGCg -3'
miRNA:   3'- cCUGCGCGG--CGGcC-CcCGCAa--AUGCG- -5'
5600 5' -60.1 NC_001806.1 + 10688 0.66 0.768604
Target:  5'- cGGuCGCaGaugggGCCGGGGGgGcgUACGCc -3'
miRNA:   3'- -CCuGCG-Cgg---CGGCCCCCgCaaAUGCG- -5'
5600 5' -60.1 NC_001806.1 + 130181 0.66 0.768604
Target:  5'- --cUGUGUCGCCGguucaaGGGGCGcugugACGCg -3'
miRNA:   3'- ccuGCGCGGCGGC------CCCCGCaaa--UGCG- -5'
5600 5' -60.1 NC_001806.1 + 22706 0.66 0.768604
Target:  5'- --cCGCGcCCGCCucccccgcgGGGGGCGacgaccccgACGCc -3'
miRNA:   3'- ccuGCGC-GGCGG---------CCCCCGCaaa------UGCG- -5'
5600 5' -60.1 NC_001806.1 + 25933 0.66 0.768604
Target:  5'- --nCGCGCgGCgggcgUGGGGGCGgggcCGCg -3'
miRNA:   3'- ccuGCGCGgCG-----GCCCCCGCaaauGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.