miRNA display CGI


Results 21 - 40 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5600 5' -60.1 NC_001806.1 + 1848 0.66 0.7677
Target:  5'- cGGCG-GCgCGUCGGGGuacaggcGCGcgUGCGCg -3'
miRNA:   3'- cCUGCgCG-GCGGCCCC-------CGCaaAUGCG- -5'
5600 5' -60.1 NC_001806.1 + 67516 0.66 0.765891
Target:  5'- gGGAgcccUGgGCCGUCgcggcgagagaucgGGGGGCGcaggACGCg -3'
miRNA:   3'- -CCU----GCgCGGCGG--------------CCCCCGCaaa-UGCG- -5'
5600 5' -60.1 NC_001806.1 + 20101 0.66 0.759523
Target:  5'- uGGCcgGCGCCGUCuGcGGGCGUcgGuCGCg -3'
miRNA:   3'- cCUG--CGCGGCGGcC-CCCGCAaaU-GCG- -5'
5600 5' -60.1 NC_001806.1 + 22559 0.66 0.759523
Target:  5'- cGGCGCugacggggGCCGCgGGGagccccGGCGccgGCGCa -3'
miRNA:   3'- cCUGCG--------CGGCGgCCC------CCGCaaaUGCG- -5'
5600 5' -60.1 NC_001806.1 + 73997 0.66 0.759523
Target:  5'- gGGGCgGCcCCGCaGGGGGCucc-GCGCc -3'
miRNA:   3'- -CCUG-CGcGGCGgCCCCCGcaaaUGCG- -5'
5600 5' -60.1 NC_001806.1 + 21 0.66 0.759523
Target:  5'- aGGGcCGCGCgCGacccCCGGGGGgugUGUUUugGg -3'
miRNA:   3'- -CCU-GCGCG-GC----GGCCCCC---GCAAAugCg -5'
5600 5' -60.1 NC_001806.1 + 151731 0.66 0.759523
Target:  5'- aGGGcCGCGCgCGacccCCGGGGGgugUGUUUugGg -3'
miRNA:   3'- -CCU-GCGCG-GC----GGCCCCC---GCAAAugCg -5'
5600 5' -60.1 NC_001806.1 + 10367 0.66 0.759523
Target:  5'- cGGGgGCGCUggGCCaagaccucggGGGGGCGgggggAgGCg -3'
miRNA:   3'- -CCUgCGCGG--CGG----------CCCCCGCaaa--UgCG- -5'
5600 5' -60.1 NC_001806.1 + 129741 0.66 0.759523
Target:  5'- uGGaaGCGCGCCuuGgCGGGGGCGauaacaucUGCa -3'
miRNA:   3'- -CC--UGCGCGG--CgGCCCCCGCaaau----GCG- -5'
5600 5' -60.1 NC_001806.1 + 91008 0.66 0.759523
Target:  5'- cGGGCGCGaCGgCGGcGGCaaggGCGCg -3'
miRNA:   3'- -CCUGCGCgGCgGCCcCCGcaaaUGCG- -5'
5600 5' -60.1 NC_001806.1 + 50327 0.66 0.759523
Target:  5'- uGACGCgggagGCCGCCuuccuGGGGcGCGUgcuggAUGUg -3'
miRNA:   3'- cCUGCG-----CGGCGG-----CCCC-CGCAaa---UGCG- -5'
5600 5' -60.1 NC_001806.1 + 52862 0.66 0.758609
Target:  5'- gGGACccgacagGCGaCCGCCGGcGGCG---ACGUg -3'
miRNA:   3'- -CCUG-------CGC-GGCGGCCcCCGCaaaUGCG- -5'
5600 5' -60.1 NC_001806.1 + 24684 0.66 0.753104
Target:  5'- cGGuGCGCGCCGgcccggcCCGGuGGcGCGggccgcggagggacuUUUGCGCc -3'
miRNA:   3'- -CC-UGCGCGGC-------GGCC-CC-CGC---------------AAAUGCG- -5'
5600 5' -60.1 NC_001806.1 + 125838 0.66 0.750338
Target:  5'- uGACGCGCCGCgGGcccccGGccgccGCGg--ACGCc -3'
miRNA:   3'- cCUGCGCGGCGgCC-----CC-----CGCaaaUGCG- -5'
5600 5' -60.1 NC_001806.1 + 20174 0.66 0.750338
Target:  5'- cGGGCcCGCCcCCGGGGcCG---GCGCg -3'
miRNA:   3'- -CCUGcGCGGcGGCCCCcGCaaaUGCG- -5'
5600 5' -60.1 NC_001806.1 + 83073 0.66 0.750338
Target:  5'- cGGCaGCaGCUGgaaggCGGGGGCGUUcgaGCGCg -3'
miRNA:   3'- cCUG-CG-CGGCg----GCCCCCGCAAa--UGCG- -5'
5600 5' -60.1 NC_001806.1 + 38814 0.66 0.750338
Target:  5'- gGGAC-C-CgGgCGGGGGUGgaUACGCu -3'
miRNA:   3'- -CCUGcGcGgCgGCCCCCGCaaAUGCG- -5'
5600 5' -60.1 NC_001806.1 + 98604 0.66 0.750338
Target:  5'- gGGGCGCGCgGUCGGcaagguggugauGGGCaucgUGgGCg -3'
miRNA:   3'- -CCUGCGCGgCGGCC------------CCCGcaa-AUgCG- -5'
5600 5' -60.1 NC_001806.1 + 735 0.66 0.749414
Target:  5'- cGGCGCGucCCGCgcucccuCGGGGGgGUUcGgGCa -3'
miRNA:   3'- cCUGCGC--GGCG-------GCCCCCgCAAaUgCG- -5'
5600 5' -60.1 NC_001806.1 + 55563 0.67 0.74478
Target:  5'- gGGugGUGuuGUucuuggguuugggguCGGGGGUGg--ACGUg -3'
miRNA:   3'- -CCugCGCggCG---------------GCCCCCGCaaaUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.