miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5601 3' -58.9 NC_001806.1 + 88062 0.66 0.78302
Target:  5'- cGGGCGUggGCaggccCCUGGccGCCAGCUCg- -3'
miRNA:   3'- cUCCGCA--UGaa---GGACC--CGGUCGAGgu -5'
5601 3' -58.9 NC_001806.1 + 102080 0.66 0.754958
Target:  5'- cGGGCGaugGCcUCCgaaGGGaCGGCUCCGg -3'
miRNA:   3'- cUCCGCa--UGaAGGa--CCCgGUCGAGGU- -5'
5601 3' -58.9 NC_001806.1 + 30030 0.66 0.754958
Target:  5'- gGAGGCGggGCggCCgagGGGCCGGaCgggCCc -3'
miRNA:   3'- -CUCCGCa-UGaaGGa--CCCGGUC-Ga--GGu -5'
5601 3' -58.9 NC_001806.1 + 149820 0.66 0.754958
Target:  5'- -cGGCGggUACUcgcUCCgGGGCgGGgCUCCAu -3'
miRNA:   3'- cuCCGC--AUGA---AGGaCCCGgUC-GAGGU- -5'
5601 3' -58.9 NC_001806.1 + 78677 0.66 0.732778
Target:  5'- -cGGCaGUGC-UCCUGGGCgCGcccgucgucguggcGCUCCGc -3'
miRNA:   3'- cuCCG-CAUGaAGGACCCG-GU--------------CGAGGU- -5'
5601 3' -58.9 NC_001806.1 + 115073 0.67 0.716086
Target:  5'- -uGGCGggaaACcgCCUgGGGCCGGC-CCAg -3'
miRNA:   3'- cuCCGCa---UGaaGGA-CCCGGUCGaGGU- -5'
5601 3' -58.9 NC_001806.1 + 150841 0.67 0.716086
Target:  5'- cGGGUGUaacguuagaccgAgUUCgCcGGGCCGGCUCCGc -3'
miRNA:   3'- cUCCGCA------------UgAAG-GaCCCGGUCGAGGU- -5'
5601 3' -58.9 NC_001806.1 + 147647 0.67 0.67608
Target:  5'- -cGGCGcGCgUCCgcggggcggGcGGCCGGCUCCGc -3'
miRNA:   3'- cuCCGCaUGaAGGa--------C-CCGGUCGAGGU- -5'
5601 3' -58.9 NC_001806.1 + 13178 0.68 0.665968
Target:  5'- aGGGCGUACUUacaggagcCCUuGGCUcgguGCUCCAg -3'
miRNA:   3'- cUCCGCAUGAA--------GGAcCCGGu---CGAGGU- -5'
5601 3' -58.9 NC_001806.1 + 113081 0.68 0.665968
Target:  5'- cGGGGCGUACguggcggCCccGGCCGGCcCCGc -3'
miRNA:   3'- -CUCCGCAUGaa-----GGacCCGGUCGaGGU- -5'
5601 3' -58.9 NC_001806.1 + 132343 0.68 0.635503
Target:  5'- cGAGGUGUGCgaggUGGGCCuGCggCCAc -3'
miRNA:   3'- -CUCCGCAUGaaggACCCGGuCGa-GGU- -5'
5601 3' -58.9 NC_001806.1 + 27133 0.68 0.635503
Target:  5'- cGAGGCGg----CCUGGGUCuuccgcggAGCUCCc -3'
miRNA:   3'- -CUCCGCaugaaGGACCCGG--------UCGAGGu -5'
5601 3' -58.9 NC_001806.1 + 150714 0.69 0.564668
Target:  5'- cGAGGCGgcCcgcCCUgugagggcGGGCUGGCUCCAa -3'
miRNA:   3'- -CUCCGCauGaa-GGA--------CCCGGUCGAGGU- -5'
5601 3' -58.9 NC_001806.1 + 129395 0.69 0.564668
Target:  5'- cGAGGUuauGUcgACg--CUGGGCCAGCUCUAu -3'
miRNA:   3'- -CUCCG---CA--UGaagGACCCGGUCGAGGU- -5'
5601 3' -58.9 NC_001806.1 + 109243 0.7 0.525064
Target:  5'- cGGGGCGgaa-UCCUGGGCCccgGGCaCCAg -3'
miRNA:   3'- -CUCCGCaugaAGGACCCGG---UCGaGGU- -5'
5601 3' -58.9 NC_001806.1 + 85922 0.7 0.496065
Target:  5'- -uGGCGUAUgcgggaUCCUcGGCCAGCUCgGa -3'
miRNA:   3'- cuCCGCAUGa-----AGGAcCCGGUCGAGgU- -5'
5601 3' -58.9 NC_001806.1 + 120095 0.71 0.449443
Target:  5'- -uGGCGUGCcuccgggcCCUGGGCCAGgccaUCCGg -3'
miRNA:   3'- cuCCGCAUGaa------GGACCCGGUCg---AGGU- -5'
5601 3' -58.9 NC_001806.1 + 139993 0.72 0.422656
Target:  5'- --cGCGUAUccguucgacUCCUGGGUCAGCUCCu -3'
miRNA:   3'- cucCGCAUGa--------AGGACCCGGUCGAGGu -5'
5601 3' -58.9 NC_001806.1 + 66618 0.75 0.297381
Target:  5'- gGAGGCGcccaaacagccGC-UCCaGGGCCGGCUCCAa -3'
miRNA:   3'- -CUCCGCa----------UGaAGGaCCCGGUCGAGGU- -5'
5601 3' -58.9 NC_001806.1 + 114828 1.08 0.001563
Target:  5'- gGAGGCGUACUUCCUGGGCCAGCUCCAg -3'
miRNA:   3'- -CUCCGCAUGAAGGACCCGGUCGAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.