miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5601 5' -54.3 NC_001806.1 + 147779 0.66 0.947453
Target:  5'- aCGCGGggGGCccggGGCGGGGGGcgGAGCc- -3'
miRNA:   3'- -GUGCU--UUGa---CCGCCCCCCcaUUUGaa -5'
5601 5' -54.3 NC_001806.1 + 25173 0.66 0.94293
Target:  5'- gAgGggGCgaggGGCGGGaGGGGgcgagGGGCg- -3'
miRNA:   3'- gUgCuuUGa---CCGCCC-CCCCa----UUUGaa -5'
5601 5' -54.3 NC_001806.1 + 25207 0.66 0.94293
Target:  5'- gAgGggGCgaggGGCGGGaGGGGgcgagGGGCg- -3'
miRNA:   3'- gUgCuuUGa---CCGCCC-CCCCa----UUUGaa -5'
5601 5' -54.3 NC_001806.1 + 25139 0.66 0.94293
Target:  5'- gAgGggGCgaggGGCGGGaGGGGgcgagGGGCg- -3'
miRNA:   3'- gUgCuuUGa---CCGCCC-CCCCa----UUUGaa -5'
5601 5' -54.3 NC_001806.1 + 25105 0.66 0.94293
Target:  5'- gAgGggGCgaggGGCGGGaGGGGgcgagGGGCg- -3'
miRNA:   3'- gUgCuuUGa---CCGCCC-CCCCa----UUUGaa -5'
5601 5' -54.3 NC_001806.1 + 25241 0.66 0.94293
Target:  5'- gAgGggGCgaggGGCGGGaGGGGgcgagGGGCg- -3'
miRNA:   3'- gUgCuuUGa---CCGCCC-CCCCa----UUUGaa -5'
5601 5' -54.3 NC_001806.1 + 25275 0.66 0.94293
Target:  5'- gAgGggGCgaggGGCGGGaGGGGgcgagGGGCg- -3'
miRNA:   3'- gUgCuuUGa---CCGCCC-CCCCa----UUUGaa -5'
5601 5' -54.3 NC_001806.1 + 25309 0.66 0.94293
Target:  5'- gAgGggGCgaggGGCGGGaGGGGgcgagGGGCg- -3'
miRNA:   3'- gUgCuuUGa---CCGCCC-CCCCa----UUUGaa -5'
5601 5' -54.3 NC_001806.1 + 25343 0.66 0.94293
Target:  5'- gAgGggGCgaggGGCGGGaGGGGgcgagGGGCg- -3'
miRNA:   3'- gUgCuuUGa---CCGCCC-CCCCa----UUUGaa -5'
5601 5' -54.3 NC_001806.1 + 25377 0.66 0.94293
Target:  5'- gAgGggGCgaggGGCGGGaGGGGgcgagGGGCg- -3'
miRNA:   3'- gUgCuuUGa---CCGCCC-CCCCa----UUUGaa -5'
5601 5' -54.3 NC_001806.1 + 2507 0.66 0.933143
Target:  5'- gCACGcgGCcugGGCGGcGGGGGcGGGCc- -3'
miRNA:   3'- -GUGCuuUGa--CCGCC-CCCCCaUUUGaa -5'
5601 5' -54.3 NC_001806.1 + 147657 0.66 0.932627
Target:  5'- cCGCGggGCgGGCGGccggcuccgccccGGGGGccgGGGCg- -3'
miRNA:   3'- -GUGCuuUGaCCGCC-------------CCCCCa--UUUGaa -5'
5601 5' -54.3 NC_001806.1 + 40612 0.66 0.927876
Target:  5'- -cCGGAACgucuuugcaGGCGGGGGGGaucacAAACa- -3'
miRNA:   3'- guGCUUUGa--------CCGCCCCCCCa----UUUGaa -5'
5601 5' -54.3 NC_001806.1 + 21754 0.66 0.927876
Target:  5'- aCGCGAGGCgcgGGCcgucGGGcGGGGUccgucGAGCg- -3'
miRNA:   3'- -GUGCUUUGa--CCG----CCC-CCCCA-----UUUGaa -5'
5601 5' -54.3 NC_001806.1 + 46817 0.67 0.92236
Target:  5'- -cCGGGACUgGGUGgcGGGGGGUGggUUg -3'
miRNA:   3'- guGCUUUGA-CCGC--CCCCCCAUuuGAa -5'
5601 5' -54.3 NC_001806.1 + 9198 0.67 0.92236
Target:  5'- uCGCGGGugUGGCGaGGGcGcGGUcGACg- -3'
miRNA:   3'- -GUGCUUugACCGC-CCC-C-CCAuUUGaa -5'
5601 5' -54.3 NC_001806.1 + 99566 0.67 0.916594
Target:  5'- gUugGGAuccGgUGGCGGcGGGGGgGAACg- -3'
miRNA:   3'- -GugCUU---UgACCGCC-CCCCCaUUUGaa -5'
5601 5' -54.3 NC_001806.1 + 44945 0.67 0.91058
Target:  5'- -cCGggGCUGGCuagcgcGGGGGcGUGAAUa- -3'
miRNA:   3'- guGCuuUGACCGc-----CCCCC-CAUUUGaa -5'
5601 5' -54.3 NC_001806.1 + 28842 0.67 0.91058
Target:  5'- gGCaGGACUuugugaGGCGGGGGGGggagaggggGAACUc -3'
miRNA:   3'- gUGcUUUGA------CCGCCCCCCCa--------UUUGAa -5'
5601 5' -54.3 NC_001806.1 + 113286 0.67 0.91058
Target:  5'- -gUGGAGCUGcCGGGGGGG--GACg- -3'
miRNA:   3'- guGCUUUGACcGCCCCCCCauUUGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.