Results 61 - 80 of 211 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5602 | 3' | -53.6 | NC_001806.1 | + | 51098 | 0.67 | 0.941117 |
Target: 5'- aGACGagggGGCCGccgcccugcgGGCGCACGugucggggaGGCGCg -3' miRNA: 3'- gUUGUa---CCGGC----------UUGCGUGUug-------CCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 150656 | 0.67 | 0.931213 |
Target: 5'- gGACGcugguUGGCCGGGCcccgccGCGCuGGCGGcCGCc -3' miRNA: 3'- gUUGU-----ACCGGCUUG------CGUG-UUGCC-GCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 26995 | 0.67 | 0.950047 |
Target: 5'- gAGCG-GGCCGAcCGgGCucgguucCGGCGCc -3' miRNA: 3'- gUUGUaCCGGCUuGCgUGuu-----GCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 135586 | 0.67 | 0.941117 |
Target: 5'- -----aGGUCGGccGCGCGCuGCuGGCGCu -3' miRNA: 3'- guuguaCCGGCU--UGCGUGuUG-CCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 132740 | 0.67 | 0.941117 |
Target: 5'- cCGGCGUGGCCucggcggcagccGGAUGCcuccuGCccGCGGUGCg -3' miRNA: 3'- -GUUGUACCGG------------CUUGCG-----UGu-UGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 16128 | 0.67 | 0.941117 |
Target: 5'- ----cUGGCggUGAAUGUAguCAACGGCGCu -3' miRNA: 3'- guuguACCG--GCUUGCGU--GUUGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 80016 | 0.67 | 0.945703 |
Target: 5'- --cCGUaGG-CGGGC-CGCAGCGGCGCc -3' miRNA: 3'- guuGUA-CCgGCUUGcGUGUUGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 113676 | 0.67 | 0.945703 |
Target: 5'- -uGCAUGGCCGuguAC-CGgGACcugguGGCGCa -3' miRNA: 3'- guUGUACCGGCu--UGcGUgUUG-----CCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 148134 | 0.67 | 0.945703 |
Target: 5'- -uGCGUGagacGCCccgcccgucacgGGGgGCGCGGCGGCGCc -3' miRNA: 3'- guUGUAC----CGG------------CUUgCGUGUUGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 35547 | 0.67 | 0.950047 |
Target: 5'- cCAGCGa-GCCGcucGGCGCGCc-CGGCGCc -3' miRNA: 3'- -GUUGUacCGGC---UUGCGUGuuGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 136532 | 0.67 | 0.945703 |
Target: 5'- uGACG-GGCCGcuCGgGCcgccCGGCGCa -3' miRNA: 3'- gUUGUaCCGGCuuGCgUGuu--GCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 10028 | 0.67 | 0.941117 |
Target: 5'- gAGCcucGGCCGAACaGCGCggUGGgGg -3' miRNA: 3'- gUUGua-CCGGCUUG-CGUGuuGCCgCg -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 74921 | 0.67 | 0.940645 |
Target: 5'- -----aGGCCGuucggggGGCGCccccugagguuACGGCGGCGCu -3' miRNA: 3'- guuguaCCGGC-------UUGCG-----------UGUUGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 50039 | 0.67 | 0.940645 |
Target: 5'- aCGACAgggcGGCCGAGCugagGCGgCAguucgcgagccucACGGCGUu -3' miRNA: 3'- -GUUGUa---CCGGCUUG----CGU-GU-------------UGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 128230 | 0.67 | 0.939694 |
Target: 5'- gCGGCGUcGGCCGugcacaggaaGACGCccaacaGCAaggcguuugucagcACGGCGCg -3' miRNA: 3'- -GUUGUA-CCGGC----------UUGCG------UGU--------------UGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 119123 | 0.67 | 0.931213 |
Target: 5'- -uACGcGGCCGAcagcACGCGCAucauGCGCg -3' miRNA: 3'- guUGUaCCGGCU----UGCGUGUugc-CGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 42173 | 0.67 | 0.931213 |
Target: 5'- cCAGCGcacUGGUcucgCGGACGUcggccGCAauACGGCGCu -3' miRNA: 3'- -GUUGU---ACCG----GCUUGCG-----UGU--UGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 94266 | 0.67 | 0.931213 |
Target: 5'- -cGCGUGGCgCGAGgGCG-AGCGGCu- -3' miRNA: 3'- guUGUACCG-GCUUgCGUgUUGCCGcg -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 57143 | 0.67 | 0.929643 |
Target: 5'- -cGCGgugGGCCGcGcgaggggaggggguGCGCGCAuaaagcccagcACGGCGCa -3' miRNA: 3'- guUGUa--CCGGC-U--------------UGCGUGU-----------UGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 141413 | 0.68 | 0.914515 |
Target: 5'- aAACAccaGGCCGGggcgGCGCGCGGCcaaccGGCGg -3' miRNA: 3'- gUUGUa--CCGGCU----UGCGUGUUG-----CCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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