miRNA display CGI


Results 81 - 100 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5602 3' -53.6 NC_001806.1 + 98066 0.68 0.914515
Target:  5'- aCGugAUGGCCGucuccACGUGCGugcCGGuCGCc -3'
miRNA:   3'- -GUugUACCGGCu----UGCGUGUu--GCC-GCG- -5'
5602 3' -53.6 NC_001806.1 + 74487 0.68 0.914515
Target:  5'- gCAGCucgggucUGGCCGAGCu----GCGGCGCu -3'
miRNA:   3'- -GUUGu------ACCGGCUUGcguguUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 4737 0.68 0.913921
Target:  5'- gCGGCcccgGGCCGGGgcccgguCGC-CGGCGGCGUc -3'
miRNA:   3'- -GUUGua--CCGGCUU-------GCGuGUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 64838 0.68 0.912724
Target:  5'- aGACGUGGCCGGggGuccgaaagccccucCGCGCGucccgggccACGGCGg -3'
miRNA:   3'- gUUGUACCGGCU--U--------------GCGUGU---------UGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 68574 0.68 0.902161
Target:  5'- -----cGGCCu-GCGCACcGCGGCGg -3'
miRNA:   3'- guuguaCCGGcuUGCGUGuUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 86734 0.68 0.908459
Target:  5'- gAAUagGGCCcggGGGCGCGCAuguCGGcCGCc -3'
miRNA:   3'- gUUGuaCCGG---CUUGCGUGUu--GCC-GCG- -5'
5602 3' -53.6 NC_001806.1 + 76828 0.68 0.902161
Target:  5'- gCGACGgcccgGGCCuccuacgcgacaGGGCGCGCGccuGCaGGCGCu -3'
miRNA:   3'- -GUUGUa----CCGG------------CUUGCGUGU---UG-CCGCG- -5'
5602 3' -53.6 NC_001806.1 + 116216 0.68 0.902161
Target:  5'- uGACGcUGGCCGAcgugGCGCACGAauccuucgucucCGGagGCg -3'
miRNA:   3'- gUUGU-ACCGGCU----UGCGUGUU------------GCCg-CG- -5'
5602 3' -53.6 NC_001806.1 + 95465 0.68 0.914515
Target:  5'- gGACAUcgccacgcaagcGGCCGcgGACGUgcgggaGCGACGGCGg -3'
miRNA:   3'- gUUGUA------------CCGGC--UUGCG------UGUUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 141413 0.68 0.914515
Target:  5'- aAACAccaGGCCGGggcgGCGCGCGGCcaaccGGCGg -3'
miRNA:   3'- gUUGUa--CCGGCU----UGCGUGUUG-----CCGCg -5'
5602 3' -53.6 NC_001806.1 + 25922 0.68 0.914515
Target:  5'- gCGGCGUGcGC---GCGCGCGGCgGGCGUg -3'
miRNA:   3'- -GUUGUAC-CGgcuUGCGUGUUG-CCGCG- -5'
5602 3' -53.6 NC_001806.1 + 112154 0.68 0.928051
Target:  5'- gCGGCAcGGCCGAccagaugcugcacguGCuGCugGAaaaGGCGCc -3'
miRNA:   3'- -GUUGUaCCGGCU---------------UG-CGugUUg--CCGCG- -5'
5602 3' -53.6 NC_001806.1 + 114234 0.68 0.925893
Target:  5'- cCAACAcGGUC-AACGCcauguuucACAACGGgCGCg -3'
miRNA:   3'- -GUUGUaCCGGcUUGCG--------UGUUGCC-GCG- -5'
5602 3' -53.6 NC_001806.1 + 34384 0.68 0.925893
Target:  5'- cCGAgGUGGgUGggUGgGCGGCGGUGg -3'
miRNA:   3'- -GUUgUACCgGCuuGCgUGUUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 32682 0.68 0.925893
Target:  5'- uGGCGUGGCCGAccuuaGC-CucuGgGGCGCc -3'
miRNA:   3'- gUUGUACCGGCUug---CGuGu--UgCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 74338 0.68 0.92425
Target:  5'- cCAGCggGGCCaGACGCugGACgcccccgaggaccuGGCGg -3'
miRNA:   3'- -GUUGuaCCGGcUUGCGugUUG--------------CCGCg -5'
5602 3' -53.6 NC_001806.1 + 63465 0.68 0.920327
Target:  5'- cCGGuCGUGGCCGcacuGCGCACAAUgccauaGGCcaGCu -3'
miRNA:   3'- -GUU-GUACCGGCu---UGCGUGUUG------CCG--CG- -5'
5602 3' -53.6 NC_001806.1 + 28171 0.68 0.920327
Target:  5'- cCAGCGcgaggugaggGGCCGGGCGC-CAugucuGgGGCGCc -3'
miRNA:   3'- -GUUGUa---------CCGGCUUGCGuGU-----UgCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 128914 0.68 0.920327
Target:  5'- -----gGGCCGGGCGUcccauuggggACGACGaGUGCg -3'
miRNA:   3'- guuguaCCGGCUUGCG----------UGUUGC-CGCG- -5'
5602 3' -53.6 NC_001806.1 + 65206 0.68 0.919757
Target:  5'- cCGAC-UGGaucccccucccccCCGAAuacCGCAgAGCGGCGCc -3'
miRNA:   3'- -GUUGuACC-------------GGCUU---GCGUgUUGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.