miRNA display CGI


Results 101 - 120 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5602 3' -53.6 NC_001806.1 + 84830 0.68 0.925348
Target:  5'- cCGGCccgGGCCcuaucacggcaagGAGCGC-CGGCGGuCGCg -3'
miRNA:   3'- -GUUGua-CCGG-------------CUUGCGuGUUGCC-GCG- -5'
5602 3' -53.6 NC_001806.1 + 32682 0.68 0.925893
Target:  5'- uGGCGUGGCCGAccuuaGC-CucuGgGGCGCc -3'
miRNA:   3'- gUUGUACCGGCUug---CGuGu--UgCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 34384 0.68 0.925893
Target:  5'- cCGAgGUGGgUGggUGgGCGGCGGUGg -3'
miRNA:   3'- -GUUgUACCgGCuuGCgUGUUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 114234 0.68 0.925893
Target:  5'- cCAACAcGGUC-AACGCcauguuucACAACGGgCGCg -3'
miRNA:   3'- -GUUGUaCCGGcUUGCG--------UGUUGCC-GCG- -5'
5602 3' -53.6 NC_001806.1 + 112154 0.68 0.928051
Target:  5'- gCGGCAcGGCCGAccagaugcugcacguGCuGCugGAaaaGGCGCc -3'
miRNA:   3'- -GUUGUaCCGGCU---------------UG-CGugUUg--CCGCG- -5'
5602 3' -53.6 NC_001806.1 + 128914 0.68 0.920327
Target:  5'- -----gGGCCGGGCGUcccauuggggACGACGaGUGCg -3'
miRNA:   3'- guuguaCCGGCUUGCG----------UGUUGC-CGCG- -5'
5602 3' -53.6 NC_001806.1 + 65206 0.68 0.919757
Target:  5'- cCGAC-UGGaucccccucccccCCGAAuacCGCAgAGCGGCGCc -3'
miRNA:   3'- -GUUGuACC-------------GGCUU---GCGUgUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 94689 0.69 0.895622
Target:  5'- cCAGCAggcgcaggugcGGCUGGACGC-CAACGaGCuGCg -3'
miRNA:   3'- -GUUGUa----------CCGGCUUGCGuGUUGC-CG-CG- -5'
5602 3' -53.6 NC_001806.1 + 130814 0.69 0.888847
Target:  5'- gCAcCAUGGCCGcGCGCcuGCAuugggacuCGGCGg -3'
miRNA:   3'- -GUuGUACCGGCuUGCG--UGUu-------GCCGCg -5'
5602 3' -53.6 NC_001806.1 + 56487 0.69 0.88467
Target:  5'- -cACAUGGCCuccgagaaacaccugGGGC-CACAGCGGCa- -3'
miRNA:   3'- guUGUACCGG---------------CUUGcGUGUUGCCGcg -5'
5602 3' -53.6 NC_001806.1 + 61807 0.69 0.888847
Target:  5'- ---gGUGGuuGAugguaccggccACGUACucGCGGCGCg -3'
miRNA:   3'- guugUACCggCU-----------UGCGUGu-UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 77382 0.69 0.888847
Target:  5'- aGACG-GGCgCGGGCGCGgCGGCcGCGCc -3'
miRNA:   3'- gUUGUaCCG-GCUUGCGU-GUUGcCGCG- -5'
5602 3' -53.6 NC_001806.1 + 87397 0.69 0.895622
Target:  5'- gGGCugcGGCCGGACGCuuGGgcgccuccccccCGGCGCc -3'
miRNA:   3'- gUUGua-CCGGCUUGCGugUU------------GCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 94797 0.69 0.895622
Target:  5'- -uGCGcUGGcCCGGACGCgggggGCGACGG-GCa -3'
miRNA:   3'- guUGU-ACC-GGCUUGCG-----UGUUGCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 47530 0.69 0.895622
Target:  5'- gCGACGUGGCCuucccuACGCuuccggccacccGCGACGGCc- -3'
miRNA:   3'- -GUUGUACCGGcu----UGCG------------UGUUGCCGcg -5'
5602 3' -53.6 NC_001806.1 + 48906 0.69 0.895622
Target:  5'- ----uUGGCCGGGgGCugGgGCGGCGg -3'
miRNA:   3'- guuguACCGGCUUgCGugU-UGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 73433 0.69 0.888847
Target:  5'- gAACggGGcCCGGACGCACAcccaggcCGGgGUg -3'
miRNA:   3'- gUUGuaCC-GGCUUGCGUGUu------GCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 15709 0.69 0.895622
Target:  5'- -----cGGUCGggUGUACGGCGG-GCg -3'
miRNA:   3'- guuguaCCGGCuuGCGUGUUGCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 52573 0.69 0.888847
Target:  5'- aCGACAUGGCC-AGCGgCcCGGgGGgGCa -3'
miRNA:   3'- -GUUGUACCGGcUUGC-GuGUUgCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 25865 0.69 0.888847
Target:  5'- gCAGCccgGGCCccccgcGGGCGCGCG-CGcGCGCa -3'
miRNA:   3'- -GUUGua-CCGG------CUUGCGUGUuGC-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.