Results 81 - 100 of 211 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5602 | 3' | -53.6 | NC_001806.1 | + | 61807 | 0.69 | 0.888847 |
Target: 5'- ---gGUGGuuGAugguaccggccACGUACucGCGGCGCg -3' miRNA: 3'- guugUACCggCU-----------UGCGUGu-UGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 77382 | 0.69 | 0.888847 |
Target: 5'- aGACG-GGCgCGGGCGCGgCGGCcGCGCc -3' miRNA: 3'- gUUGUaCCG-GCUUGCGU-GUUGcCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 87397 | 0.69 | 0.895622 |
Target: 5'- gGGCugcGGCCGGACGCuuGGgcgccuccccccCGGCGCc -3' miRNA: 3'- gUUGua-CCGGCUUGCGugUU------------GCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 94797 | 0.69 | 0.895622 |
Target: 5'- -uGCGcUGGcCCGGACGCgggggGCGACGG-GCa -3' miRNA: 3'- guUGU-ACC-GGCUUGCG-----UGUUGCCgCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 47530 | 0.69 | 0.895622 |
Target: 5'- gCGACGUGGCCuucccuACGCuuccggccacccGCGACGGCc- -3' miRNA: 3'- -GUUGUACCGGcu----UGCG------------UGUUGCCGcg -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 27283 | 0.69 | 0.881839 |
Target: 5'- -----cGGCCGccaGCGCGGCGGgGCc -3' miRNA: 3'- guuguaCCGGCuugCGUGUUGCCgCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 6093 | 0.69 | 0.881839 |
Target: 5'- gCGGCGgggGGCgGGucucuccgGCGCACAuaaaggccCGGCGCg -3' miRNA: 3'- -GUUGUa--CCGgCU--------UGCGUGUu-------GCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 148682 | 0.69 | 0.881839 |
Target: 5'- -uGCAUGcacgggaagguGUCGAGCGCAgGugGGgCGCg -3' miRNA: 3'- guUGUAC-----------CGGCUUGCGUgUugCC-GCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 75771 | 0.69 | 0.859466 |
Target: 5'- uGACGUGGUCGAGCuccguCGCcuGCaGGCGCu -3' miRNA: 3'- gUUGUACCGGCUUGc----GUGu-UG-CCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 62276 | 0.69 | 0.867143 |
Target: 5'- gCAGCAgGGgaGAGCGUGgGACGGCGa -3' miRNA: 3'- -GUUGUaCCggCUUGCGUgUUGCCGCg -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 21611 | 0.69 | 0.867143 |
Target: 5'- aGACGUcgucacGGCCGGugGCGgcCAuCGGCGUc -3' miRNA: 3'- gUUGUA------CCGGCUugCGU--GUuGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 122446 | 0.69 | 0.867143 |
Target: 5'- -cGCGUGGuccCCGAGgaGCACGGCGGC-Ca -3' miRNA: 3'- guUGUACC---GGCUUg-CGUGUUGCCGcG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 94143 | 0.69 | 0.867143 |
Target: 5'- cCAACugaaGCUGAACGCGCuucaGGUGCg -3' miRNA: 3'- -GUUGuac-CGGCUUGCGUGuug-CCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 1781 | 0.69 | 0.873867 |
Target: 5'- cCGGCGUguccgGGCCGAagcgcguGCGCACG-CGGUaGCg -3' miRNA: 3'- -GUUGUA-----CCGGCU-------UGCGUGUuGCCG-CG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 30410 | 0.69 | 0.874603 |
Target: 5'- gCGGCucgggggGGCCGGGCGUggaggguggGCAcgggcccucccGCGGCGCc -3' miRNA: 3'- -GUUGua-----CCGGCUUGCG---------UGU-----------UGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 63355 | 0.69 | 0.874603 |
Target: 5'- -----aGGCCGGAUGgACGAucuCGGUGCa -3' miRNA: 3'- guuguaCCGGCUUGCgUGUU---GCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 147470 | 0.69 | 0.874603 |
Target: 5'- uCGACAgaggcGGCgGAGgggaGCGgGGCGGCGCc -3' miRNA: 3'- -GUUGUa----CCGgCUUg---CGUgUUGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 4607 | 0.69 | 0.874603 |
Target: 5'- cCGACGaGGUCGAugACGC-CGAUGGcCGCc -3' miRNA: 3'- -GUUGUaCCGGCU--UGCGuGUUGCC-GCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 1613 | 0.69 | 0.881839 |
Target: 5'- gCAGCGgcgcgcccaGGCCccAGCGCGCGcagGCGGCGUg -3' miRNA: 3'- -GUUGUa--------CCGGc-UUGCGUGU---UGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 147793 | 0.69 | 0.881839 |
Target: 5'- gGGCGgggGGCgGAGCcugGCAugGGCGCc -3' miRNA: 3'- gUUGUa--CCGgCUUGcg-UGUugCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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