miRNA display CGI


Results 61 - 80 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5602 3' -53.6 NC_001806.1 + 103111 0.7 0.826713
Target:  5'- uCGACGgggagcucGGCCGccUGCAUGGCGGCGUu -3'
miRNA:   3'- -GUUGUa-------CCGGCuuGCGUGUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 23555 0.7 0.826713
Target:  5'- gCGGCAgcccccggGGCCcAGCcaCACGGCGGCGCc -3'
miRNA:   3'- -GUUGUa-------CCGGcUUGc-GUGUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 1415 0.7 0.835194
Target:  5'- --cCGUGGCCGAG-GCcCAgcgaaucccggGCGGCGCc -3'
miRNA:   3'- guuGUACCGGCUUgCGuGU-----------UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 38527 0.7 0.835194
Target:  5'- gGAUAUGGCCucugguGGugGCGCAcCGGUaGCg -3'
miRNA:   3'- gUUGUACCGG------CUugCGUGUuGCCG-CG- -5'
5602 3' -53.6 NC_001806.1 + 48421 0.7 0.835194
Target:  5'- gGACGUGG-CGAugGCGCAugcCGacGCGCu -3'
miRNA:   3'- gUUGUACCgGCUugCGUGUu--GC--CGCG- -5'
5602 3' -53.6 NC_001806.1 + 1903 0.7 0.835194
Target:  5'- --cCcgGGCCGAacACGCggcccgaggccaGCAccguGCGGCGCa -3'
miRNA:   3'- guuGuaCCGGCU--UGCG------------UGU----UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 116971 0.7 0.835194
Target:  5'- --cCGUGGuUCGggUGUGCAccuuugACGGCGCg -3'
miRNA:   3'- guuGUACC-GGCuuGCGUGU------UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 21908 0.7 0.843485
Target:  5'- gAGCGccGCCGGGCccGCGCGGCGGUGg -3'
miRNA:   3'- gUUGUacCGGCUUG--CGUGUUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 37744 0.7 0.843485
Target:  5'- gCGugGUGGCguCGAugGUGuCGGCGGCGg -3'
miRNA:   3'- -GUugUACCG--GCUugCGU-GUUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 24034 0.7 0.851578
Target:  5'- gGACAcGGCCGccugGGCGgGCAAuuggacCGGCGCc -3'
miRNA:   3'- gUUGUaCCGGC----UUGCgUGUU------GCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 26613 0.7 0.851578
Target:  5'- aCGACGacUGGCCGGAcagcccccCGCcCGAgcCGGCGCc -3'
miRNA:   3'- -GUUGU--ACCGGCUU--------GCGuGUU--GCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 20602 0.7 0.851578
Target:  5'- --cCAUGGCaGAugGCGCGgauggGCGGgGCc -3'
miRNA:   3'- guuGUACCGgCUugCGUGU-----UGCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 51401 0.69 0.859466
Target:  5'- uUAGCGcGGCCGuggGCGCcuuGCGGCaGCGCu -3'
miRNA:   3'- -GUUGUaCCGGCu--UGCG---UGUUGcCGCG- -5'
5602 3' -53.6 NC_001806.1 + 75771 0.69 0.859466
Target:  5'- uGACGUGGUCGAGCuccguCGCcuGCaGGCGCu -3'
miRNA:   3'- gUUGUACCGGCUUGc----GUGu-UG-CCGCG- -5'
5602 3' -53.6 NC_001806.1 + 94143 0.69 0.867143
Target:  5'- cCAACugaaGCUGAACGCGCuucaGGUGCg -3'
miRNA:   3'- -GUUGuac-CGGCUUGCGUGuug-CCGCG- -5'
5602 3' -53.6 NC_001806.1 + 122446 0.69 0.867143
Target:  5'- -cGCGUGGuccCCGAGgaGCACGGCGGC-Ca -3'
miRNA:   3'- guUGUACC---GGCUUg-CGUGUUGCCGcG- -5'
5602 3' -53.6 NC_001806.1 + 21611 0.69 0.867143
Target:  5'- aGACGUcgucacGGCCGGugGCGgcCAuCGGCGUc -3'
miRNA:   3'- gUUGUA------CCGGCUugCGU--GUuGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 62276 0.69 0.867143
Target:  5'- gCAGCAgGGgaGAGCGUGgGACGGCGa -3'
miRNA:   3'- -GUUGUaCCggCUUGCGUgUUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 1781 0.69 0.873867
Target:  5'- cCGGCGUguccgGGCCGAagcgcguGCGCACG-CGGUaGCg -3'
miRNA:   3'- -GUUGUA-----CCGGCU-------UGCGUGUuGCCG-CG- -5'
5602 3' -53.6 NC_001806.1 + 63355 0.69 0.874603
Target:  5'- -----aGGCCGGAUGgACGAucuCGGUGCa -3'
miRNA:   3'- guuguaCCGGCUUGCgUGUU---GCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.