miRNA display CGI


Results 81 - 100 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5602 3' -53.6 NC_001806.1 + 147470 0.69 0.874603
Target:  5'- uCGACAgaggcGGCgGAGgggaGCGgGGCGGCGCc -3'
miRNA:   3'- -GUUGUa----CCGgCUUg---CGUgUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 63355 0.69 0.874603
Target:  5'- -----aGGCCGGAUGgACGAucuCGGUGCa -3'
miRNA:   3'- guuguaCCGGCUUGCgUGUU---GCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 30410 0.69 0.874603
Target:  5'- gCGGCucgggggGGCCGGGCGUggaggguggGCAcgggcccucccGCGGCGCc -3'
miRNA:   3'- -GUUGua-----CCGGCUUGCG---------UGU-----------UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 133649 0.69 0.881839
Target:  5'- gCGGCGccuuGCUGGACGCAgAgcacuacugGCGGCGCg -3'
miRNA:   3'- -GUUGUac--CGGCUUGCGUgU---------UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 119478 0.69 0.881839
Target:  5'- gAGCGcGGaCCGGGCGUGCGGCcuguGGCGUu -3'
miRNA:   3'- gUUGUaCC-GGCUUGCGUGUUG----CCGCG- -5'
5602 3' -53.6 NC_001806.1 + 93432 0.69 0.881839
Target:  5'- -cGCGUGcCCugGAGCGCgGCAACGGCGa -3'
miRNA:   3'- guUGUACcGG--CUUGCG-UGUUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 27283 0.69 0.881839
Target:  5'- -----cGGCCGccaGCGCGGCGGgGCc -3'
miRNA:   3'- guuguaCCGGCuugCGUGUUGCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 6093 0.69 0.881839
Target:  5'- gCGGCGgggGGCgGGucucuccgGCGCACAuaaaggccCGGCGCg -3'
miRNA:   3'- -GUUGUa--CCGgCU--------UGCGUGUu-------GCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 148682 0.69 0.881839
Target:  5'- -uGCAUGcacgggaagguGUCGAGCGCAgGugGGgCGCg -3'
miRNA:   3'- guUGUAC-----------CGGCUUGCGUgUugCC-GCG- -5'
5602 3' -53.6 NC_001806.1 + 147793 0.69 0.881839
Target:  5'- gGGCGgggGGCgGAGCcugGCAugGGCGCc -3'
miRNA:   3'- gUUGUa--CCGgCUUGcg-UGUugCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 1613 0.69 0.881839
Target:  5'- gCAGCGgcgcgcccaGGCCccAGCGCGCGcagGCGGCGUg -3'
miRNA:   3'- -GUUGUa--------CCGGc-UUGCGUGU---UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 56487 0.69 0.88467
Target:  5'- -cACAUGGCCuccgagaaacaccugGGGC-CACAGCGGCa- -3'
miRNA:   3'- guUGUACCGG---------------CUUGcGUGUUGCCGcg -5'
5602 3' -53.6 NC_001806.1 + 77382 0.69 0.888847
Target:  5'- aGACG-GGCgCGGGCGCGgCGGCcGCGCc -3'
miRNA:   3'- gUUGUaCCG-GCUUGCGU-GUUGcCGCG- -5'
5602 3' -53.6 NC_001806.1 + 61807 0.69 0.888847
Target:  5'- ---gGUGGuuGAugguaccggccACGUACucGCGGCGCg -3'
miRNA:   3'- guugUACCggCU-----------UGCGUGu-UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 130814 0.69 0.888847
Target:  5'- gCAcCAUGGCCGcGCGCcuGCAuugggacuCGGCGg -3'
miRNA:   3'- -GUuGUACCGGCuUGCG--UGUu-------GCCGCg -5'
5602 3' -53.6 NC_001806.1 + 73433 0.69 0.888847
Target:  5'- gAACggGGcCCGGACGCACAcccaggcCGGgGUg -3'
miRNA:   3'- gUUGuaCC-GGCUUGCGUGUu------GCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 52573 0.69 0.888847
Target:  5'- aCGACAUGGCC-AGCGgCcCGGgGGgGCa -3'
miRNA:   3'- -GUUGUACCGGcUUGC-GuGUUgCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 25865 0.69 0.888847
Target:  5'- gCAGCccgGGCCccccgcGGGCGCGCG-CGcGCGCa -3'
miRNA:   3'- -GUUGua-CCGG------CUUGCGUGUuGC-CGCG- -5'
5602 3' -53.6 NC_001806.1 + 94797 0.69 0.895622
Target:  5'- -uGCGcUGGcCCGGACGCgggggGCGACGG-GCa -3'
miRNA:   3'- guUGU-ACC-GGCUUGCG-----UGUUGCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 47530 0.69 0.895622
Target:  5'- gCGACGUGGCCuucccuACGCuuccggccacccGCGACGGCc- -3'
miRNA:   3'- -GUUGUACCGGcu----UGCG------------UGUUGCCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.