Results 101 - 120 of 211 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5602 | 3' | -53.6 | NC_001806.1 | + | 48906 | 0.69 | 0.895622 |
Target: 5'- ----uUGGCCGGGgGCugGgGCGGCGg -3' miRNA: 3'- guuguACCGGCUUgCGugU-UGCCGCg -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 47530 | 0.69 | 0.895622 |
Target: 5'- gCGACGUGGCCuucccuACGCuuccggccacccGCGACGGCc- -3' miRNA: 3'- -GUUGUACCGGcu----UGCG------------UGUUGCCGcg -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 94797 | 0.69 | 0.895622 |
Target: 5'- -uGCGcUGGcCCGGACGCgggggGCGACGG-GCa -3' miRNA: 3'- guUGU-ACC-GGCUUGCG-----UGUUGCCgCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 87397 | 0.69 | 0.895622 |
Target: 5'- gGGCugcGGCCGGACGCuuGGgcgccuccccccCGGCGCc -3' miRNA: 3'- gUUGua-CCGGCUUGCGugUU------------GCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 76828 | 0.68 | 0.902161 |
Target: 5'- gCGACGgcccgGGCCuccuacgcgacaGGGCGCGCGccuGCaGGCGCu -3' miRNA: 3'- -GUUGUa----CCGG------------CUUGCGUGU---UG-CCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 67212 | 0.68 | 0.902161 |
Target: 5'- cCGGCcUGGCgGGGCGCGCugGugGGC-Ca -3' miRNA: 3'- -GUUGuACCGgCUUGCGUG--UugCCGcG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 116216 | 0.68 | 0.902161 |
Target: 5'- uGACGcUGGCCGAcgugGCGCACGAauccuucgucucCGGagGCg -3' miRNA: 3'- gUUGU-ACCGGCU----UGCGUGUU------------GCCg-CG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 68574 | 0.68 | 0.902161 |
Target: 5'- -----cGGCCu-GCGCACcGCGGCGg -3' miRNA: 3'- guuguaCCGGcuUGCGUGuUGCCGCg -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 50510 | 0.68 | 0.902161 |
Target: 5'- uCGugGgGGCCGA--GCACGA-GGCGCu -3' miRNA: 3'- -GUugUaCCGGCUugCGUGUUgCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 86734 | 0.68 | 0.908459 |
Target: 5'- gAAUagGGCCcggGGGCGCGCAuguCGGcCGCc -3' miRNA: 3'- gUUGuaCCGG---CUUGCGUGUu--GCC-GCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 59145 | 0.68 | 0.910911 |
Target: 5'- gCAGCcgGGCCGGggucucgggugcgggACGCGgaGGgGGCGUa -3' miRNA: 3'- -GUUGuaCCGGCU---------------UGCGUg-UUgCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 64838 | 0.68 | 0.912724 |
Target: 5'- aGACGUGGCCGGggGuccgaaagccccucCGCGCGucccgggccACGGCGg -3' miRNA: 3'- gUUGUACCGGCU--U--------------GCGUGU---------UGCCGCg -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 4737 | 0.68 | 0.913921 |
Target: 5'- gCGGCcccgGGCCGGGgcccgguCGC-CGGCGGCGUc -3' miRNA: 3'- -GUUGua--CCGGCUU-------GCGuGUUGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 141413 | 0.68 | 0.914515 |
Target: 5'- aAACAccaGGCCGGggcgGCGCGCGGCcaaccGGCGg -3' miRNA: 3'- gUUGUa--CCGGCU----UGCGUGUUG-----CCGCg -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 95465 | 0.68 | 0.914515 |
Target: 5'- gGACAUcgccacgcaagcGGCCGcgGACGUgcgggaGCGACGGCGg -3' miRNA: 3'- gUUGUA------------CCGGC--UUGCG------UGUUGCCGCg -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 49583 | 0.68 | 0.914515 |
Target: 5'- --gUcgGGCCGGAgG-ACGGCGGCGg -3' miRNA: 3'- guuGuaCCGGCUUgCgUGUUGCCGCg -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 151284 | 0.68 | 0.914515 |
Target: 5'- gGGCcggGGCCGGG-GgGCGGCGGCGg -3' miRNA: 3'- gUUGua-CCGGCUUgCgUGUUGCCGCg -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 98066 | 0.68 | 0.914515 |
Target: 5'- aCGugAUGGCCGucuccACGUGCGugcCGGuCGCc -3' miRNA: 3'- -GUugUACCGGCu----UGCGUGUu--GCC-GCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 74487 | 0.68 | 0.914515 |
Target: 5'- gCAGCucgggucUGGCCGAGCu----GCGGCGCu -3' miRNA: 3'- -GUUGu------ACCGGCUUGcguguUGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 25922 | 0.68 | 0.914515 |
Target: 5'- gCGGCGUGcGC---GCGCGCGGCgGGCGUg -3' miRNA: 3'- -GUUGUAC-CGgcuUGCGUGUUG-CCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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