Results 81 - 100 of 211 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5602 | 3' | -53.6 | NC_001806.1 | + | 114234 | 0.68 | 0.925893 |
Target: 5'- cCAACAcGGUC-AACGCcauguuucACAACGGgCGCg -3' miRNA: 3'- -GUUGUaCCGGcUUGCG--------UGUUGCC-GCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 34384 | 0.68 | 0.925893 |
Target: 5'- cCGAgGUGGgUGggUGgGCGGCGGUGg -3' miRNA: 3'- -GUUgUACCgGCuuGCgUGUUGCCGCg -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 32682 | 0.68 | 0.925893 |
Target: 5'- uGGCGUGGCCGAccuuaGC-CucuGgGGCGCc -3' miRNA: 3'- gUUGUACCGGCUug---CGuGu--UgCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 84830 | 0.68 | 0.925348 |
Target: 5'- cCGGCccgGGCCcuaucacggcaagGAGCGC-CGGCGGuCGCg -3' miRNA: 3'- -GUUGua-CCGG-------------CUUGCGuGUUGCC-GCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 100868 | 0.68 | 0.92425 |
Target: 5'- aCGAUAguGCCGAggcgccgcccgaucGCGCACAGCGcgacguGCGCg -3' miRNA: 3'- -GUUGUacCGGCU--------------UGCGUGUUGC------CGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 74338 | 0.68 | 0.92425 |
Target: 5'- cCAGCggGGCCaGACGCugGACgcccccgaggaccuGGCGg -3' miRNA: 3'- -GUUGuaCCGGcUUGCGugUUG--------------CCGCg -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 128914 | 0.68 | 0.920327 |
Target: 5'- -----gGGCCGGGCGUcccauuggggACGACGaGUGCg -3' miRNA: 3'- guuguaCCGGCUUGCG----------UGUUGC-CGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 23234 | 0.68 | 0.920327 |
Target: 5'- gGACGccGCCG-ACGCGCuGGCGGcCGCc -3' miRNA: 3'- gUUGUacCGGCuUGCGUG-UUGCC-GCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 28171 | 0.68 | 0.920327 |
Target: 5'- cCAGCGcgaggugaggGGCCGGGCGC-CAugucuGgGGCGCc -3' miRNA: 3'- -GUUGUa---------CCGGCUUGCGuGU-----UgCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 63465 | 0.68 | 0.920327 |
Target: 5'- cCGGuCGUGGCCGcacuGCGCACAAUgccauaGGCcaGCu -3' miRNA: 3'- -GUU-GUACCGGCu---UGCGUGUUG------CCG--CG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 65206 | 0.68 | 0.919757 |
Target: 5'- cCGAC-UGGaucccccucccccCCGAAuacCGCAgAGCGGCGCc -3' miRNA: 3'- -GUUGuACC-------------GGCUU---GCGUgUUGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 74487 | 0.68 | 0.914515 |
Target: 5'- gCAGCucgggucUGGCCGAGCu----GCGGCGCu -3' miRNA: 3'- -GUUGu------ACCGGCUUGcguguUGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 98066 | 0.68 | 0.914515 |
Target: 5'- aCGugAUGGCCGucuccACGUGCGugcCGGuCGCc -3' miRNA: 3'- -GUugUACCGGCu----UGCGUGUu--GCC-GCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 151284 | 0.68 | 0.914515 |
Target: 5'- gGGCcggGGCCGGG-GgGCGGCGGCGg -3' miRNA: 3'- gUUGua-CCGGCUUgCgUGUUGCCGCg -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 49583 | 0.68 | 0.914515 |
Target: 5'- --gUcgGGCCGGAgG-ACGGCGGCGg -3' miRNA: 3'- guuGuaCCGGCUUgCgUGUUGCCGCg -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 95465 | 0.68 | 0.914515 |
Target: 5'- gGACAUcgccacgcaagcGGCCGcgGACGUgcgggaGCGACGGCGg -3' miRNA: 3'- gUUGUA------------CCGGC--UUGCG------UGUUGCCGCg -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 141413 | 0.68 | 0.914515 |
Target: 5'- aAACAccaGGCCGGggcgGCGCGCGGCcaaccGGCGg -3' miRNA: 3'- gUUGUa--CCGGCU----UGCGUGUUG-----CCGCg -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 25922 | 0.68 | 0.914515 |
Target: 5'- gCGGCGUGcGC---GCGCGCGGCgGGCGUg -3' miRNA: 3'- -GUUGUAC-CGgcuUGCGUGUUG-CCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 4737 | 0.68 | 0.913921 |
Target: 5'- gCGGCcccgGGCCGGGgcccgguCGC-CGGCGGCGUc -3' miRNA: 3'- -GUUGua--CCGGCUU-------GCGuGUUGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 64838 | 0.68 | 0.912724 |
Target: 5'- aGACGUGGCCGGggGuccgaaagccccucCGCGCGucccgggccACGGCGg -3' miRNA: 3'- gUUGUACCGGCU--U--------------GCGUGU---------UGCCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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