miRNA display CGI


Results 61 - 80 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5602 3' -53.6 NC_001806.1 + 32682 0.68 0.925893
Target:  5'- uGGCGUGGCCGAccuuaGC-CucuGgGGCGCc -3'
miRNA:   3'- gUUGUACCGGCUug---CGuGu--UgCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 34308 0.66 0.961668
Target:  5'- gCGGCGggGGgCG-GCGCGCcgGACGGgGCg -3'
miRNA:   3'- -GUUGUa-CCgGCuUGCGUG--UUGCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 34384 0.68 0.925893
Target:  5'- cCGAgGUGGgUGggUGgGCGGCGGUGg -3'
miRNA:   3'- -GUUgUACCgGCuuGCgUGUUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 34423 0.71 0.791053
Target:  5'- gGGCcgGGCCGGGC-CGgGugGGCGg -3'
miRNA:   3'- gUUGuaCCGGCUUGcGUgUugCCGCg -5'
5602 3' -53.6 NC_001806.1 + 35281 0.73 0.681633
Target:  5'- --uCGUGGCUuugGGGCGCAUccauggcuucggaGGCGGCGCa -3'
miRNA:   3'- guuGUACCGG---CUUGCGUG-------------UUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 35547 0.67 0.950047
Target:  5'- cCAGCGa-GCCGcucGGCGCGCc-CGGCGCc -3'
miRNA:   3'- -GUUGUacCGGC---UUGCGUGuuGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 35863 0.72 0.713269
Target:  5'- -uACAgGGCCcAACGCGCGGC-GCGCg -3'
miRNA:   3'- guUGUaCCGGcUUGCGUGUUGcCGCG- -5'
5602 3' -53.6 NC_001806.1 + 37744 0.7 0.843485
Target:  5'- gCGugGUGGCguCGAugGUGuCGGCGGCGg -3'
miRNA:   3'- -GUugUACCG--GCUugCGU-GUUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 38527 0.7 0.835194
Target:  5'- gGAUAUGGCCucugguGGugGCGCAcCGGUaGCg -3'
miRNA:   3'- gUUGUACCGG------CUugCGUGUuGCCG-CG- -5'
5602 3' -53.6 NC_001806.1 + 42173 0.67 0.931213
Target:  5'- cCAGCGcacUGGUcucgCGGACGUcggccGCAauACGGCGCu -3'
miRNA:   3'- -GUUGU---ACCG----GCUUGCG-----UGU--UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 42717 0.67 0.950047
Target:  5'- gAACGUGGCCuccGCGUcCAgggugGCGGCGa -3'
miRNA:   3'- gUUGUACCGGcu-UGCGuGU-----UGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 43497 0.66 0.958026
Target:  5'- uCGACggGGCCGuGGCgGCcCAucaggacaagauGCGGCGCc -3'
miRNA:   3'- -GUUGuaCCGGC-UUG-CGuGU------------UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 47530 0.69 0.895622
Target:  5'- gCGACGUGGCCuucccuACGCuuccggccacccGCGACGGCc- -3'
miRNA:   3'- -GUUGUACCGGcu----UGCG------------UGUUGCCGcg -5'
5602 3' -53.6 NC_001806.1 + 47704 0.67 0.936288
Target:  5'- -uGCAccGCCaGGCGCACAugcGCGGaCGCg -3'
miRNA:   3'- guUGUacCGGcUUGCGUGU---UGCC-GCG- -5'
5602 3' -53.6 NC_001806.1 + 48421 0.7 0.835194
Target:  5'- gGACGUGG-CGAugGCGCAugcCGacGCGCu -3'
miRNA:   3'- gUUGUACCgGCUugCGUGUu--GC--CGCG- -5'
5602 3' -53.6 NC_001806.1 + 48906 0.69 0.895622
Target:  5'- ----uUGGCCGGGgGCugGgGCGGCGg -3'
miRNA:   3'- guuguACCGGCUUgCGugU-UGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 49288 0.7 0.81805
Target:  5'- uCGACGggaaGGCCcgcGAGCcCgACGACGGCGCg -3'
miRNA:   3'- -GUUGUa---CCGG---CUUGcG-UGUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 49583 0.68 0.914515
Target:  5'- --gUcgGGCCGGAgG-ACGGCGGCGg -3'
miRNA:   3'- guuGuaCCGGCUUgCgUGUUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 50039 0.67 0.940645
Target:  5'- aCGACAgggcGGCCGAGCugagGCGgCAguucgcgagccucACGGCGUu -3'
miRNA:   3'- -GUUGUa---CCGGCUUG----CGU-GU-------------UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 50236 0.66 0.954154
Target:  5'- -cGCGUGGCCGccCGCuAUGcCGGcCGCa -3'
miRNA:   3'- guUGUACCGGCuuGCG-UGUuGCC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.