miRNA display CGI


Results 81 - 100 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5602 3' -53.6 NC_001806.1 + 50510 0.68 0.902161
Target:  5'- uCGugGgGGCCGA--GCACGA-GGCGCu -3'
miRNA:   3'- -GUugUaCCGGCUugCGUGUUgCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 50648 0.71 0.781747
Target:  5'- gGGCGUGcggGGACGCGCAcCGGCGCc -3'
miRNA:   3'- gUUGUACcggCUUGCGUGUuGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 51098 0.67 0.941117
Target:  5'- aGACGagggGGCCGccgcccugcgGGCGCACGugucggggaGGCGCg -3'
miRNA:   3'- gUUGUa---CCGGC----------UUGCGUGUug-------CCGCG- -5'
5602 3' -53.6 NC_001806.1 + 51260 0.72 0.753037
Target:  5'- -uGCAgcGCCGGACGC---GCGGCGCg -3'
miRNA:   3'- guUGUacCGGCUUGCGuguUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 51401 0.69 0.859466
Target:  5'- uUAGCGcGGCCGuggGCGCcuuGCGGCaGCGCu -3'
miRNA:   3'- -GUUGUaCCGGCu--UGCG---UGUUGcCGCG- -5'
5602 3' -53.6 NC_001806.1 + 52573 0.69 0.888847
Target:  5'- aCGACAUGGCC-AGCGgCcCGGgGGgGCa -3'
miRNA:   3'- -GUUGUACCGGcUUGC-GuGUUgCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 53839 0.66 0.961668
Target:  5'- gGAUcuuGCCGAcuggacGCGUGCGACGGCGg -3'
miRNA:   3'- gUUGuacCGGCU------UGCGUGUUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 56487 0.69 0.88467
Target:  5'- -cACAUGGCCuccgagaaacaccugGGGC-CACAGCGGCa- -3'
miRNA:   3'- guUGUACCGG---------------CUUGcGUGUUGCCGcg -5'
5602 3' -53.6 NC_001806.1 + 57143 0.67 0.929643
Target:  5'- -cGCGgugGGCCGcGcgaggggaggggguGCGCGCAuaaagcccagcACGGCGCa -3'
miRNA:   3'- guUGUa--CCGGC-U--------------UGCGUGU-----------UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 57401 0.66 0.971266
Target:  5'- gAGCAucccgcgccuUGGCCguGAugGCACG-CGGgGUg -3'
miRNA:   3'- gUUGU----------ACCGG--CUugCGUGUuGCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 59145 0.68 0.910911
Target:  5'- gCAGCcgGGCCGGggucucgggugcgggACGCGgaGGgGGCGUa -3'
miRNA:   3'- -GUUGuaCCGGCU---------------UGCGUg-UUgCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 59869 0.66 0.961668
Target:  5'- aCGACGgcccaGGCCGGACGgACGAggaGGC-Ca -3'
miRNA:   3'- -GUUGUa----CCGGCUUGCgUGUUg--CCGcG- -5'
5602 3' -53.6 NC_001806.1 + 61807 0.69 0.888847
Target:  5'- ---gGUGGuuGAugguaccggccACGUACucGCGGCGCg -3'
miRNA:   3'- guugUACCggCU-----------UGCGUGu-UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 62276 0.69 0.867143
Target:  5'- gCAGCAgGGgaGAGCGUGgGACGGCGa -3'
miRNA:   3'- -GUUGUaCCggCUUGCGUgUUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 63009 0.71 0.772303
Target:  5'- gGACG-GGCCccgcGAACGCACAGC-GCGUu -3'
miRNA:   3'- gUUGUaCCGG----CUUGCGUGUUGcCGCG- -5'
5602 3' -53.6 NC_001806.1 + 63355 0.69 0.874603
Target:  5'- -----aGGCCGGAUGgACGAucuCGGUGCa -3'
miRNA:   3'- guuguaCCGGCUUGCgUGUU---GCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 63465 0.68 0.920327
Target:  5'- cCGGuCGUGGCCGcacuGCGCACAAUgccauaGGCcaGCu -3'
miRNA:   3'- -GUU-GUACCGGCu---UGCGUGUUG------CCG--CG- -5'
5602 3' -53.6 NC_001806.1 + 64838 0.68 0.912724
Target:  5'- aGACGUGGCCGGggGuccgaaagccccucCGCGCGucccgggccACGGCGg -3'
miRNA:   3'- gUUGUACCGGCU--U--------------GCGUGU---------UGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 65206 0.68 0.919757
Target:  5'- cCGAC-UGGaucccccucccccCCGAAuacCGCAgAGCGGCGCc -3'
miRNA:   3'- -GUUGuACC-------------GGCUU---GCGUgUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 65367 0.78 0.396393
Target:  5'- gCGACGUGGgguucccCCGAAUGcCACGACGGCGg -3'
miRNA:   3'- -GUUGUACC-------GGCUUGC-GUGUUGCCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.