miRNA display CGI


Results 101 - 120 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5602 3' -53.6 NC_001806.1 + 66382 0.67 0.950047
Target:  5'- gGGCAUcauGCCGAGCucuGCAaagGCGGCGUa -3'
miRNA:   3'- gUUGUAc--CGGCUUG---CGUgu-UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 67034 0.72 0.733334
Target:  5'- uGACGUGGgcCCGuacCGCAuCGGCGGCGUc -3'
miRNA:   3'- gUUGUACC--GGCuu-GCGU-GUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 67212 0.68 0.902161
Target:  5'- cCGGCcUGGCgGGGCGCGCugGugGGC-Ca -3'
miRNA:   3'- -GUUGuACCGgCUUGCGUG--UugCCGcG- -5'
5602 3' -53.6 NC_001806.1 + 68574 0.68 0.902161
Target:  5'- -----cGGCCu-GCGCACcGCGGCGg -3'
miRNA:   3'- guuguaCCGGcuUGCGUGuUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 69111 0.66 0.971266
Target:  5'- uCGGCcuGUGcGCCcccggGGACGC-UAAUGGCGCg -3'
miRNA:   3'- -GUUG--UAC-CGG-----CUUGCGuGUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 70563 0.66 0.958026
Target:  5'- gCAGCAUGuaucacgacGCCaAGCGCGCGcUGGuCGCg -3'
miRNA:   3'- -GUUGUAC---------CGGcUUGCGUGUuGCC-GCG- -5'
5602 3' -53.6 NC_001806.1 + 70961 0.72 0.743236
Target:  5'- uCAGCucGGCCGAccaGCGCGCcGCGGC-Ca -3'
miRNA:   3'- -GUUGuaCCGGCU---UGCGUGuUGCCGcG- -5'
5602 3' -53.6 NC_001806.1 + 72475 0.73 0.67236
Target:  5'- -cGCGUGGCCaucACGCACccccuGCGGgGCg -3'
miRNA:   3'- guUGUACCGGcu-UGCGUGu----UGCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 73256 0.67 0.950047
Target:  5'- aAACGUGGCCGc---CACGGCGGUu- -3'
miRNA:   3'- gUUGUACCGGCuugcGUGUUGCCGcg -5'
5602 3' -53.6 NC_001806.1 + 73433 0.69 0.888847
Target:  5'- gAACggGGcCCGGACGCACAcccaggcCGGgGUg -3'
miRNA:   3'- gUUGuaCC-GGCUUGCGUGUu------GCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 74338 0.68 0.92425
Target:  5'- cCAGCggGGCCaGACGCugGACgcccccgaggaccuGGCGg -3'
miRNA:   3'- -GUUGuaCCGGcUUGCGugUUG--------------CCGCg -5'
5602 3' -53.6 NC_001806.1 + 74487 0.68 0.914515
Target:  5'- gCAGCucgggucUGGCCGAGCu----GCGGCGCu -3'
miRNA:   3'- -GUUGu------ACCGGCUUGcguguUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 74630 0.83 0.210429
Target:  5'- -cGCAUGGCCGAggaaGCGCuGCGGCaGGCGCg -3'
miRNA:   3'- guUGUACCGGCU----UGCG-UGUUG-CCGCG- -5'
5602 3' -53.6 NC_001806.1 + 74921 0.67 0.940645
Target:  5'- -----aGGCCGuucggggGGCGCccccugagguuACGGCGGCGCu -3'
miRNA:   3'- guuguaCCGGC-------UUGCG-----------UGUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 75460 0.72 0.720328
Target:  5'- gAGCAUgccucccugauccaGGCCGcgacGCGCGCGAccacCGGCGCg -3'
miRNA:   3'- gUUGUA--------------CCGGCu---UGCGUGUU----GCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 75771 0.69 0.859466
Target:  5'- uGACGUGGUCGAGCuccguCGCcuGCaGGCGCu -3'
miRNA:   3'- gUUGUACCGGCUUGc----GUGu-UG-CCGCG- -5'
5602 3' -53.6 NC_001806.1 + 76240 0.73 0.682661
Target:  5'- --uCcgGGCCG-ACGCGCGGC-GCGCg -3'
miRNA:   3'- guuGuaCCGGCuUGCGUGUUGcCGCG- -5'
5602 3' -53.6 NC_001806.1 + 76382 0.66 0.971266
Target:  5'- gGACGc-GCUGGugGCGUGCGugGCGGCGCu -3'
miRNA:   3'- gUUGUacCGGCU--UGCGUGU--UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 76481 0.71 0.772303
Target:  5'- gGACcUGGCCGAuaccaaggACGC-CGugGuGCGCg -3'
miRNA:   3'- gUUGuACCGGCU--------UGCGuGUugC-CGCG- -5'
5602 3' -53.6 NC_001806.1 + 76656 0.75 0.579168
Target:  5'- gCGAcCGUGGCCaaGACGCugGACcaGGCGCg -3'
miRNA:   3'- -GUU-GUACCGGc-UUGCGugUUG--CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.