miRNA display CGI


Results 121 - 140 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5602 3' -53.6 NC_001806.1 + 76828 0.68 0.902161
Target:  5'- gCGACGgcccgGGCCuccuacgcgacaGGGCGCGCGccuGCaGGCGCu -3'
miRNA:   3'- -GUUGUa----CCGG------------CUUGCGUGU---UG-CCGCG- -5'
5602 3' -53.6 NC_001806.1 + 77382 0.69 0.888847
Target:  5'- aGACG-GGCgCGGGCGCGgCGGCcGCGCc -3'
miRNA:   3'- gUUGUaCCG-GCUUGCGU-GUUGcCGCG- -5'
5602 3' -53.6 NC_001806.1 + 79523 0.74 0.651666
Target:  5'- gGGCGUcccGGCCGAAaGCACGcggcCGGCGCc -3'
miRNA:   3'- gUUGUA---CCGGCUUgCGUGUu---GCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 79688 0.66 0.954154
Target:  5'- cCGACAccGCCGGGCaCGCucccUGGCGCg -3'
miRNA:   3'- -GUUGUacCGGCUUGcGUGuu--GCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 80016 0.67 0.945703
Target:  5'- --cCGUaGG-CGGGC-CGCAGCGGCGCc -3'
miRNA:   3'- guuGUA-CCgGCUUGcGUGUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 84144 0.67 0.935791
Target:  5'- -cGCggGGCaCGcACGCGCGACGuggcuccGCGCu -3'
miRNA:   3'- guUGuaCCG-GCuUGCGUGUUGC-------CGCG- -5'
5602 3' -53.6 NC_001806.1 + 84246 0.75 0.558693
Target:  5'- aAACAcGGCCGGGgGCGCG--GGCGCa -3'
miRNA:   3'- gUUGUaCCGGCUUgCGUGUugCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 84830 0.68 0.925348
Target:  5'- cCGGCccgGGCCcuaucacggcaagGAGCGC-CGGCGGuCGCg -3'
miRNA:   3'- -GUUGua-CCGG-------------CUUGCGuGUUGCC-GCG- -5'
5602 3' -53.6 NC_001806.1 + 86734 0.68 0.908459
Target:  5'- gAAUagGGCCcggGGGCGCGCAuguCGGcCGCc -3'
miRNA:   3'- gUUGuaCCGG---CUUGCGUGUu--GCC-GCG- -5'
5602 3' -53.6 NC_001806.1 + 86795 0.66 0.965085
Target:  5'- -----aGGCCGcccAGCGCGCGuggacguacucGCGGuCGCg -3'
miRNA:   3'- guuguaCCGGC---UUGCGUGU-----------UGCC-GCG- -5'
5602 3' -53.6 NC_001806.1 + 86833 0.66 0.967973
Target:  5'- gCAGCAUcucgcGGCCGAugGUcgucaccgucgcgGCAAC-GUGCa -3'
miRNA:   3'- -GUUGUA-----CCGGCUugCG-------------UGUUGcCGCG- -5'
5602 3' -53.6 NC_001806.1 + 87397 0.69 0.895622
Target:  5'- gGGCugcGGCCGGACGCuuGGgcgccuccccccCGGCGCc -3'
miRNA:   3'- gUUGua-CCGGCUUGCGugUU------------GCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 89765 0.67 0.941117
Target:  5'- -----cGGCUGAugACGCGCGG-GGCGUg -3'
miRNA:   3'- guuguaCCGGCU--UGCGUGUUgCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 90306 0.85 0.181287
Target:  5'- cCAACGUGGCCGuggucguggguucuCGCACGACGGgGCu -3'
miRNA:   3'- -GUUGUACCGGCuu------------GCGUGUUGCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 91001 0.71 0.800211
Target:  5'- -cGCG-GGgCGGGCGCgACGGCGGCGg -3'
miRNA:   3'- guUGUaCCgGCUUGCG-UGUUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 91505 0.66 0.961668
Target:  5'- cCAAgAU-GCUguuuuaccugGAGCGCuGCGACGGCGCc -3'
miRNA:   3'- -GUUgUAcCGG----------CUUGCG-UGUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 92908 0.72 0.743236
Target:  5'- -cGCGUGGUCc-GCGCAgGGCGGgGCg -3'
miRNA:   3'- guUGUACCGGcuUGCGUgUUGCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 93432 0.69 0.881839
Target:  5'- -cGCGUGcCCugGAGCGCgGCAACGGCGa -3'
miRNA:   3'- guUGUACcGG--CUUGCG-UGUUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 94143 0.69 0.867143
Target:  5'- cCAACugaaGCUGAACGCGCuucaGGUGCg -3'
miRNA:   3'- -GUUGuac-CGGCUUGCGUGuug-CCGCG- -5'
5602 3' -53.6 NC_001806.1 + 94266 0.67 0.931213
Target:  5'- -cGCGUGGCgCGAGgGCG-AGCGGCu- -3'
miRNA:   3'- guUGUACCG-GCUUgCGUgUUGCCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.