miRNA display CGI


Results 41 - 60 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5602 3' -53.6 NC_001806.1 + 116971 0.7 0.835194
Target:  5'- --cCGUGGuUCGggUGUGCAccuuugACGGCGCg -3'
miRNA:   3'- guuGUACC-GGCuuGCGUGU------UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 116216 0.68 0.902161
Target:  5'- uGACGcUGGCCGAcgugGCGCACGAauccuucgucucCGGagGCg -3'
miRNA:   3'- gUUGU-ACCGGCU----UGCGUGUU------------GCCg-CG- -5'
5602 3' -53.6 NC_001806.1 + 114315 1.12 0.003142
Target:  5'- aCAACAUGGCCGAACGCACAACGGCGCu -3'
miRNA:   3'- -GUUGUACCGGCUUGCGUGUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 114234 0.68 0.925893
Target:  5'- cCAACAcGGUC-AACGCcauguuucACAACGGgCGCg -3'
miRNA:   3'- -GUUGUaCCGGcUUGCG--------UGUUGCC-GCG- -5'
5602 3' -53.6 NC_001806.1 + 113676 0.67 0.945703
Target:  5'- -uGCAUGGCCGuguAC-CGgGACcugguGGCGCa -3'
miRNA:   3'- guUGUACCGGCu--UGcGUgUUG-----CCGCG- -5'
5602 3' -53.6 NC_001806.1 + 112415 0.66 0.958026
Target:  5'- -cGCAU-GCCGAcACGCGCGgGCGGC-Cg -3'
miRNA:   3'- guUGUAcCGGCU-UGCGUGU-UGCCGcG- -5'
5602 3' -53.6 NC_001806.1 + 112154 0.68 0.928051
Target:  5'- gCGGCAcGGCCGAccagaugcugcacguGCuGCugGAaaaGGCGCc -3'
miRNA:   3'- -GUUGUaCCGGCU---------------UG-CGugUUg--CCGCG- -5'
5602 3' -53.6 NC_001806.1 + 109294 0.66 0.961668
Target:  5'- uGGCGgagGcGCCGGcgaaACGC-CAGCGGgGCc -3'
miRNA:   3'- gUUGUa--C-CGGCU----UGCGuGUUGCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 108922 0.71 0.781747
Target:  5'- --gUcgGGCCGAgggACGUACAGgccgUGGCGCu -3'
miRNA:   3'- guuGuaCCGGCU---UGCGUGUU----GCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 107350 0.66 0.971266
Target:  5'- cCGGCAgccguucuUGGCUG-GCGUccccuCGGCGGUGCa -3'
miRNA:   3'- -GUUGU--------ACCGGCuUGCGu----GUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 106950 0.66 0.971266
Target:  5'- --uCGUGaacGCCGcccACGCA-AACGGCGCg -3'
miRNA:   3'- guuGUAC---CGGCu--UGCGUgUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 106753 0.66 0.954154
Target:  5'- uGACGcgGGCCGAcaacggcuccGCGCugGACGccuccgccGCGUg -3'
miRNA:   3'- gUUGUa-CCGGCU----------UGCGugUUGC--------CGCG- -5'
5602 3' -53.6 NC_001806.1 + 105878 0.71 0.800211
Target:  5'- gGGCAUGGaCCGcAUGUAC--UGGCGCg -3'
miRNA:   3'- gUUGUACC-GGCuUGCGUGuuGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 104687 0.66 0.954154
Target:  5'- aGAUAUcGGCCGGGgaCGCGGCGGUGg -3'
miRNA:   3'- gUUGUA-CCGGCUUgcGUGUUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 103442 0.72 0.723342
Target:  5'- gAugAgggGGCgCGAugGCACAGCGGaccgGCg -3'
miRNA:   3'- gUugUa--CCG-GCUugCGUGUUGCCg---CG- -5'
5602 3' -53.6 NC_001806.1 + 103111 0.7 0.826713
Target:  5'- uCGACGgggagcucGGCCGccUGCAUGGCGGCGUu -3'
miRNA:   3'- -GUUGUa-------CCGGCuuGCGUGUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 102387 0.67 0.950047
Target:  5'- uCAGCGUGGCgaucacGAUGUGCGACGccaGCGCu -3'
miRNA:   3'- -GUUGUACCGgc----UUGCGUGUUGC---CGCG- -5'
5602 3' -53.6 NC_001806.1 + 102255 0.78 0.423623
Target:  5'- ---uGUGGCCccggcugagGAACGCgGCGGCGGCGCg -3'
miRNA:   3'- guugUACCGG---------CUUGCG-UGUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 100868 0.68 0.92425
Target:  5'- aCGAUAguGCCGAggcgccgcccgaucGCGCACAGCGcgacguGCGCg -3'
miRNA:   3'- -GUUGUacCGGCU--------------UGCGUGUUGC------CGCG- -5'
5602 3' -53.6 NC_001806.1 + 100815 0.71 0.781747
Target:  5'- gCGACAggUGGCgaaaGGGCGCgAUGGCGGCGUc -3'
miRNA:   3'- -GUUGU--ACCGg---CUUGCG-UGUUGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.