miRNA display CGI


Results 61 - 80 of 211 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5602 3' -53.6 NC_001806.1 + 99945 0.7 0.824133
Target:  5'- uGGCG-GGCCGcGCGC-CGggagucgaccccgcGCGGCGCg -3'
miRNA:   3'- gUUGUaCCGGCuUGCGuGU--------------UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 98998 0.66 0.954154
Target:  5'- cCGACAUGGUC--AUGCGCaAGCGcCGCa -3'
miRNA:   3'- -GUUGUACCGGcuUGCGUG-UUGCcGCG- -5'
5602 3' -53.6 NC_001806.1 + 98066 0.68 0.914515
Target:  5'- aCGugAUGGCCGucuccACGUGCGugcCGGuCGCc -3'
miRNA:   3'- -GUugUACCGGCu----UGCGUGUu--GCC-GCG- -5'
5602 3' -53.6 NC_001806.1 + 96370 0.66 0.965085
Target:  5'- --cCAUGcGCCaGGGCGCccccgcGCGGgGGCGCc -3'
miRNA:   3'- guuGUAC-CGG-CUUGCG------UGUUgCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 95465 0.68 0.914515
Target:  5'- gGACAUcgccacgcaagcGGCCGcgGACGUgcgggaGCGACGGCGg -3'
miRNA:   3'- gUUGUA------------CCGGC--UUGCG------UGUUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 95299 0.75 0.568908
Target:  5'- gGGCGgggGGCgcggCGGACGCGCccaagGGCGGCGCg -3'
miRNA:   3'- gUUGUa--CCG----GCUUGCGUG-----UUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 95073 0.66 0.959511
Target:  5'- gGGCGgcgGGCgGAGCauuucgaucGCGCGuucgggagccaccugGCGGCGCu -3'
miRNA:   3'- gUUGUa--CCGgCUUG---------CGUGU---------------UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 94996 0.66 0.961668
Target:  5'- cCAGCAac-CUGAcCGCGCuggcGCGGCGCg -3'
miRNA:   3'- -GUUGUaccGGCUuGCGUGu---UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 94797 0.69 0.895622
Target:  5'- -uGCGcUGGcCCGGACGCgggggGCGACGG-GCa -3'
miRNA:   3'- guUGU-ACC-GGCUUGCG-----UGUUGCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 94746 0.67 0.936288
Target:  5'- -cGCcgGGCuguCGGACGC-CGACcGCGCg -3'
miRNA:   3'- guUGuaCCG---GCUUGCGuGUUGcCGCG- -5'
5602 3' -53.6 NC_001806.1 + 94689 0.69 0.895622
Target:  5'- cCAGCAggcgcaggugcGGCUGGACGC-CAACGaGCuGCg -3'
miRNA:   3'- -GUUGUa----------CCGGCUUGCGuGUUGC-CG-CG- -5'
5602 3' -53.6 NC_001806.1 + 94266 0.67 0.931213
Target:  5'- -cGCGUGGCgCGAGgGCG-AGCGGCu- -3'
miRNA:   3'- guUGUACCG-GCUUgCGUgUUGCCGcg -5'
5602 3' -53.6 NC_001806.1 + 94143 0.69 0.867143
Target:  5'- cCAACugaaGCUGAACGCGCuucaGGUGCg -3'
miRNA:   3'- -GUUGuac-CGGCUUGCGUGuug-CCGCG- -5'
5602 3' -53.6 NC_001806.1 + 93432 0.69 0.881839
Target:  5'- -cGCGUGcCCugGAGCGCgGCAACGGCGa -3'
miRNA:   3'- guUGUACcGG--CUUGCG-UGUUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 92908 0.72 0.743236
Target:  5'- -cGCGUGGUCc-GCGCAgGGCGGgGCg -3'
miRNA:   3'- guUGUACCGGcuUGCGUgUUGCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 91505 0.66 0.961668
Target:  5'- cCAAgAU-GCUguuuuaccugGAGCGCuGCGACGGCGCc -3'
miRNA:   3'- -GUUgUAcCGG----------CUUGCG-UGUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 91001 0.71 0.800211
Target:  5'- -cGCG-GGgCGGGCGCgACGGCGGCGg -3'
miRNA:   3'- guUGUaCCgGCUUGCG-UGUUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 90306 0.85 0.181287
Target:  5'- cCAACGUGGCCGuggucguggguucuCGCACGACGGgGCu -3'
miRNA:   3'- -GUUGUACCGGCuu------------GCGUGUUGCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 89765 0.67 0.941117
Target:  5'- -----cGGCUGAugACGCGCGG-GGCGUg -3'
miRNA:   3'- guuguaCCGGCU--UGCGUGUUgCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 87397 0.69 0.895622
Target:  5'- gGGCugcGGCCGGACGCuuGGgcgccuccccccCGGCGCc -3'
miRNA:   3'- gUUGua-CCGGCUUGCGugUU------------GCCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.