miRNA display CGI


Results 81 - 100 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5602 3' -53.6 NC_001806.1 + 86833 0.66 0.967973
Target:  5'- gCAGCAUcucgcGGCCGAugGUcgucaccgucgcgGCAAC-GUGCa -3'
miRNA:   3'- -GUUGUA-----CCGGCUugCG-------------UGUUGcCGCG- -5'
5602 3' -53.6 NC_001806.1 + 86795 0.66 0.965085
Target:  5'- -----aGGCCGcccAGCGCGCGuggacguacucGCGGuCGCg -3'
miRNA:   3'- guuguaCCGGC---UUGCGUGU-----------UGCC-GCG- -5'
5602 3' -53.6 NC_001806.1 + 86734 0.68 0.908459
Target:  5'- gAAUagGGCCcggGGGCGCGCAuguCGGcCGCc -3'
miRNA:   3'- gUUGuaCCGG---CUUGCGUGUu--GCC-GCG- -5'
5602 3' -53.6 NC_001806.1 + 84830 0.68 0.925348
Target:  5'- cCGGCccgGGCCcuaucacggcaagGAGCGC-CGGCGGuCGCg -3'
miRNA:   3'- -GUUGua-CCGG-------------CUUGCGuGUUGCC-GCG- -5'
5602 3' -53.6 NC_001806.1 + 84246 0.75 0.558693
Target:  5'- aAACAcGGCCGGGgGCGCG--GGCGCa -3'
miRNA:   3'- gUUGUaCCGGCUUgCGUGUugCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 84144 0.67 0.935791
Target:  5'- -cGCggGGCaCGcACGCGCGACGuggcuccGCGCu -3'
miRNA:   3'- guUGuaCCG-GCuUGCGUGUUGC-------CGCG- -5'
5602 3' -53.6 NC_001806.1 + 80016 0.67 0.945703
Target:  5'- --cCGUaGG-CGGGC-CGCAGCGGCGCc -3'
miRNA:   3'- guuGUA-CCgGCUUGcGUGUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 79688 0.66 0.954154
Target:  5'- cCGACAccGCCGGGCaCGCucccUGGCGCg -3'
miRNA:   3'- -GUUGUacCGGCUUGcGUGuu--GCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 79523 0.74 0.651666
Target:  5'- gGGCGUcccGGCCGAAaGCACGcggcCGGCGCc -3'
miRNA:   3'- gUUGUA---CCGGCUUgCGUGUu---GCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 77382 0.69 0.888847
Target:  5'- aGACG-GGCgCGGGCGCGgCGGCcGCGCc -3'
miRNA:   3'- gUUGUaCCG-GCUUGCGU-GUUGcCGCG- -5'
5602 3' -53.6 NC_001806.1 + 76828 0.68 0.902161
Target:  5'- gCGACGgcccgGGCCuccuacgcgacaGGGCGCGCGccuGCaGGCGCu -3'
miRNA:   3'- -GUUGUa----CCGG------------CUUGCGUGU---UG-CCGCG- -5'
5602 3' -53.6 NC_001806.1 + 76656 0.75 0.579168
Target:  5'- gCGAcCGUGGCCaaGACGCugGACcaGGCGCg -3'
miRNA:   3'- -GUU-GUACCGGc-UUGCGugUUG--CCGCG- -5'
5602 3' -53.6 NC_001806.1 + 76481 0.71 0.772303
Target:  5'- gGACcUGGCCGAuaccaaggACGC-CGugGuGCGCg -3'
miRNA:   3'- gUUGuACCGGCU--------UGCGuGUugC-CGCG- -5'
5602 3' -53.6 NC_001806.1 + 76382 0.66 0.971266
Target:  5'- gGACGc-GCUGGugGCGUGCGugGCGGCGCu -3'
miRNA:   3'- gUUGUacCGGCU--UGCGUGU--UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 76240 0.73 0.682661
Target:  5'- --uCcgGGCCG-ACGCGCGGC-GCGCg -3'
miRNA:   3'- guuGuaCCGGCuUGCGUGUUGcCGCG- -5'
5602 3' -53.6 NC_001806.1 + 75771 0.69 0.859466
Target:  5'- uGACGUGGUCGAGCuccguCGCcuGCaGGCGCu -3'
miRNA:   3'- gUUGUACCGGCUUGc----GUGu-UG-CCGCG- -5'
5602 3' -53.6 NC_001806.1 + 75460 0.72 0.720328
Target:  5'- gAGCAUgccucccugauccaGGCCGcgacGCGCGCGAccacCGGCGCg -3'
miRNA:   3'- gUUGUA--------------CCGGCu---UGCGUGUU----GCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 74921 0.67 0.940645
Target:  5'- -----aGGCCGuucggggGGCGCccccugagguuACGGCGGCGCu -3'
miRNA:   3'- guuguaCCGGC-------UUGCG-----------UGUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 74630 0.83 0.210429
Target:  5'- -cGCAUGGCCGAggaaGCGCuGCGGCaGGCGCg -3'
miRNA:   3'- guUGUACCGGCU----UGCG-UGUUG-CCGCG- -5'
5602 3' -53.6 NC_001806.1 + 74487 0.68 0.914515
Target:  5'- gCAGCucgggucUGGCCGAGCu----GCGGCGCu -3'
miRNA:   3'- -GUUGu------ACCGGCUUGcguguUGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.