Results 101 - 120 of 211 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5602 | 3' | -53.6 | NC_001806.1 | + | 3287 | 0.71 | 0.800211 |
Target: 5'- aGGCggGGCgCGucgGCGUGCGGCGGCGg -3' miRNA: 3'- gUUGuaCCG-GCu--UGCGUGUUGCCGCg -5' |
|||||||
5602 | 3' | -53.6 | NC_001806.1 | + | 2527 | 0.71 | 0.809213 |
Target: 5'- gGGCG-GGCCcGGCGCACcgcGCGGCGa -3' miRNA: 3'- gUUGUaCCGGcUUGCGUGu--UGCCGCg -5' |
|||||||
5602 | 3' | -53.6 | NC_001806.1 | + | 4658 | 0.7 | 0.81805 |
Target: 5'- gCGGCGgcugGGCCGGcggGCGCGgCGACaGGCGg -3' miRNA: 3'- -GUUGUa---CCGGCU---UGCGU-GUUG-CCGCg -5' |
|||||||
5602 | 3' | -53.6 | NC_001806.1 | + | 49288 | 0.7 | 0.81805 |
Target: 5'- uCGACGggaaGGCCcgcGAGCcCgACGACGGCGCg -3' miRNA: 3'- -GUUGUa---CCGG---CUUGcG-UGUUGCCGCG- -5' |
|||||||
5602 | 3' | -53.6 | NC_001806.1 | + | 99945 | 0.7 | 0.824133 |
Target: 5'- uGGCG-GGCCGcGCGC-CGggagucgaccccgcGCGGCGCg -3' miRNA: 3'- gUUGUaCCGGCuUGCGuGU--------------UGCCGCG- -5' |
|||||||
5602 | 3' | -53.6 | NC_001806.1 | + | 100815 | 0.71 | 0.781747 |
Target: 5'- gCGACAggUGGCgaaaGGGCGCgAUGGCGGCGUc -3' miRNA: 3'- -GUUGU--ACCGg---CUUGCG-UGUUGCCGCG- -5' |
|||||||
5602 | 3' | -53.6 | NC_001806.1 | + | 50648 | 0.71 | 0.781747 |
Target: 5'- gGGCGUGcggGGACGCGCAcCGGCGCc -3' miRNA: 3'- gUUGUACcggCUUGCGUGUuGCCGCG- -5' |
|||||||
5602 | 3' | -53.6 | NC_001806.1 | + | 24509 | 0.72 | 0.722338 |
Target: 5'- -cGCcgGGCCGugcugccGGCGCugGACGGCcggGCg -3' miRNA: 3'- guUGuaCCGGC-------UUGCGugUUGCCG---CG- -5' |
|||||||
5602 | 3' | -53.6 | NC_001806.1 | + | 103442 | 0.72 | 0.723342 |
Target: 5'- gAugAgggGGCgCGAugGCACAGCGGaccgGCg -3' miRNA: 3'- gUugUa--CCG-GCUugCGUGUUGCCg---CG- -5' |
|||||||
5602 | 3' | -53.6 | NC_001806.1 | + | 67034 | 0.72 | 0.733334 |
Target: 5'- uGACGUGGgcCCGuacCGCAuCGGCGGCGUc -3' miRNA: 3'- gUUGUACC--GGCuu-GCGU-GUUGCCGCG- -5' |
|||||||
5602 | 3' | -53.6 | NC_001806.1 | + | 12139 | 0.72 | 0.733334 |
Target: 5'- gCGACAcaGGgCGAAUGcCACGGCGGgGCg -3' miRNA: 3'- -GUUGUa-CCgGCUUGC-GUGUUGCCgCG- -5' |
|||||||
5602 | 3' | -53.6 | NC_001806.1 | + | 70961 | 0.72 | 0.743236 |
Target: 5'- uCAGCucGGCCGAccaGCGCGCcGCGGC-Ca -3' miRNA: 3'- -GUUGuaCCGGCU---UGCGUGuUGCCGcG- -5' |
|||||||
5602 | 3' | -53.6 | NC_001806.1 | + | 92908 | 0.72 | 0.743236 |
Target: 5'- -cGCGUGGUCc-GCGCAgGGCGGgGCg -3' miRNA: 3'- guUGUACCGGcuUGCGUgUUGCCgCG- -5' |
|||||||
5602 | 3' | -53.6 | NC_001806.1 | + | 1821 | 0.72 | 0.743236 |
Target: 5'- -cACGUuGCCGccgcggcacaGGCGCAgCGGCGGCGCg -3' miRNA: 3'- guUGUAcCGGC----------UUGCGU-GUUGCCGCG- -5' |
|||||||
5602 | 3' | -53.6 | NC_001806.1 | + | 151563 | 0.72 | 0.743236 |
Target: 5'- gCGGCGggGGCCgcGAugGCgGCGGCGGCGg -3' miRNA: 3'- -GUUGUa-CCGG--CUugCG-UGUUGCCGCg -5' |
|||||||
5602 | 3' | -53.6 | NC_001806.1 | + | 51260 | 0.72 | 0.753037 |
Target: 5'- -uGCAgcGCCGGACGC---GCGGCGCg -3' miRNA: 3'- guUGUacCGGCUUGCGuguUGCCGCG- -5' |
|||||||
5602 | 3' | -53.6 | NC_001806.1 | + | 126033 | 0.72 | 0.753037 |
Target: 5'- cCAGCcugcGGCCGGAUGUACAGucuuCGGCGg -3' miRNA: 3'- -GUUGua--CCGGCUUGCGUGUU----GCCGCg -5' |
|||||||
5602 | 3' | -53.6 | NC_001806.1 | + | 132155 | 0.72 | 0.762729 |
Target: 5'- -cGCGUuGCCGAgcaucccgACGCGCGGCuGGCGUg -3' miRNA: 3'- guUGUAcCGGCU--------UGCGUGUUG-CCGCG- -5' |
|||||||
5602 | 3' | -53.6 | NC_001806.1 | + | 63009 | 0.71 | 0.772303 |
Target: 5'- gGACG-GGCCccgcGAACGCACAGC-GCGUu -3' miRNA: 3'- gUUGUaCCGG----CUUGCGUGUUGcCGCG- -5' |
|||||||
5602 | 3' | -53.6 | NC_001806.1 | + | 76481 | 0.71 | 0.772303 |
Target: 5'- gGACcUGGCCGAuaccaaggACGC-CGugGuGCGCg -3' miRNA: 3'- gUUGuACCGGCU--------UGCGuGUugC-CGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home