Results 41 - 60 of 211 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5602 | 3' | -53.6 | NC_001806.1 | + | 102255 | 0.78 | 0.423623 |
Target: 5'- ---uGUGGCCccggcugagGAACGCgGCGGCGGCGCg -3' miRNA: 3'- guugUACCGG---------CUUGCG-UGUUGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 65367 | 0.78 | 0.396393 |
Target: 5'- gCGACGUGGgguucccCCGAAUGcCACGACGGCGg -3' miRNA: 3'- -GUUGUACC-------GGCUUGC-GUGUUGCCGCg -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 21735 | 0.81 | 0.275508 |
Target: 5'- aCGACGcGGCCGAccACGCACGcgaGGCGCg -3' miRNA: 3'- -GUUGUaCCGGCU--UGCGUGUug-CCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 74630 | 0.83 | 0.210429 |
Target: 5'- -cGCAUGGCCGAggaaGCGCuGCGGCaGGCGCg -3' miRNA: 3'- guUGUACCGGCU----UGCG-UGUUG-CCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 90306 | 0.85 | 0.181287 |
Target: 5'- cCAACGUGGCCGuggucguggguucuCGCACGACGGgGCu -3' miRNA: 3'- -GUUGUACCGGCuu------------GCGUGUUGCCgCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 76656 | 0.75 | 0.579168 |
Target: 5'- gCGAcCGUGGCCaaGACGCugGACcaGGCGCg -3' miRNA: 3'- -GUU-GUACCGGc-UUGCGugUUG--CCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 79523 | 0.74 | 0.651666 |
Target: 5'- gGGCGUcccGGCCGAAaGCACGcggcCGGCGCc -3' miRNA: 3'- gUUGUA---CCGGCUUgCGUGUu---GCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 30373 | 0.72 | 0.713269 |
Target: 5'- gAACAgagucUGuGCCGGGCGCgugcgACggUGGCGCg -3' miRNA: 3'- gUUGU-----AC-CGGCUUGCG-----UGuuGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 24662 | 0.72 | 0.713269 |
Target: 5'- -uACGUGGCgcugGGGCGCGaGGCGGUGCg -3' miRNA: 3'- guUGUACCGg---CUUGCGUgUUGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 2950 | 0.72 | 0.712257 |
Target: 5'- gGGCcgGGCCGGgacucuuGCGCuuGCGccccucccGCGGCGCg -3' miRNA: 3'- gUUGuaCCGGCU-------UGCG--UGU--------UGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 121350 | 0.73 | 0.703125 |
Target: 5'- gAGCcaGUGGUCGGcgaGCugGAUGGCGCg -3' miRNA: 3'- gUUG--UACCGGCUug-CGugUUGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 22632 | 0.73 | 0.702107 |
Target: 5'- -cGCAccGGgCGAGCGCGCGgugcccgccggguACGGCGCc -3' miRNA: 3'- guUGUa-CCgGCUUGCGUGU-------------UGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 126142 | 0.73 | 0.692919 |
Target: 5'- nGGCGaGGCCG-GCGCcgACAcGCGGCGCu -3' miRNA: 3'- gUUGUaCCGGCuUGCG--UGU-UGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 4316 | 0.73 | 0.692919 |
Target: 5'- uGGCGUcgcGGCCGGccaccgccGCGCGggccCGGCGGCGCu -3' miRNA: 3'- gUUGUA---CCGGCU--------UGCGU----GUUGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 140901 | 0.73 | 0.692919 |
Target: 5'- gGGCG-GGCCGucauccGCGCGCGuuggggagaaagACGGCGCu -3' miRNA: 3'- gUUGUaCCGGCu-----UGCGUGU------------UGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 24288 | 0.73 | 0.692919 |
Target: 5'- ---aGUGcGCCGuGCGCugGccgGCGGCGCg -3' miRNA: 3'- guugUAC-CGGCuUGCGugU---UGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 22433 | 0.73 | 0.692919 |
Target: 5'- uCGGCuggGGCCuGGCGCACG-CGGCGg -3' miRNA: 3'- -GUUGua-CCGGcUUGCGUGUuGCCGCg -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 76240 | 0.73 | 0.682661 |
Target: 5'- --uCcgGGCCG-ACGCGCGGC-GCGCg -3' miRNA: 3'- guuGuaCCGGCuUGCGUGUUGcCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 35281 | 0.73 | 0.681633 |
Target: 5'- --uCGUGGCUuugGGGCGCAUccauggcuucggaGGCGGCGCa -3' miRNA: 3'- guuGUACCGG---CUUGCGUG-------------UUGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 72475 | 0.73 | 0.67236 |
Target: 5'- -cGCGUGGCCaucACGCACccccuGCGGgGCg -3' miRNA: 3'- guUGUACCGGcu-UGCGUGu----UGCCgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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