Results 81 - 100 of 211 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5602 | 3' | -53.6 | NC_001806.1 | + | 63009 | 0.71 | 0.772303 |
Target: 5'- gGACG-GGCCccgcGAACGCACAGC-GCGUu -3' miRNA: 3'- gUUGUaCCGG----CUUGCGUGUUGcCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 76481 | 0.71 | 0.772303 |
Target: 5'- gGACcUGGCCGAuaccaaggACGC-CGugGuGCGCg -3' miRNA: 3'- gUUGuACCGGCU--------UGCGuGUugC-CGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 50648 | 0.71 | 0.781747 |
Target: 5'- gGGCGUGcggGGACGCGCAcCGGCGCc -3' miRNA: 3'- gUUGUACcggCUUGCGUGUuGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 100815 | 0.71 | 0.781747 |
Target: 5'- gCGACAggUGGCgaaaGGGCGCgAUGGCGGCGUc -3' miRNA: 3'- -GUUGU--ACCGg---CUUGCG-UGUUGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 108922 | 0.71 | 0.781747 |
Target: 5'- --gUcgGGCCGAgggACGUACAGgccgUGGCGCu -3' miRNA: 3'- guuGuaCCGGCU---UGCGUGUU----GCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 128522 | 0.71 | 0.781747 |
Target: 5'- gCGGCAUGGCCaugcGGGcCGCAgccaGACGGCGg -3' miRNA: 3'- -GUUGUACCGG----CUU-GCGUg---UUGCCGCg -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 1562 | 0.71 | 0.791053 |
Target: 5'- gGGCcgGGCCGGcGCGCACcGCcucGCGCc -3' miRNA: 3'- gUUGuaCCGGCU-UGCGUGuUGc--CGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 151563 | 0.72 | 0.743236 |
Target: 5'- gCGGCGggGGCCgcGAugGCgGCGGCGGCGg -3' miRNA: 3'- -GUUGUa-CCGG--CUugCG-UGUUGCCGCg -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 1821 | 0.72 | 0.743236 |
Target: 5'- -cACGUuGCCGccgcggcacaGGCGCAgCGGCGGCGCg -3' miRNA: 3'- guUGUAcCGGC----------UUGCGU-GUUGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 92908 | 0.72 | 0.743236 |
Target: 5'- -cGCGUGGUCc-GCGCAgGGCGGgGCg -3' miRNA: 3'- guUGUACCGGcuUGCGUgUUGCCgCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 2950 | 0.72 | 0.712257 |
Target: 5'- gGGCcgGGCCGGgacucuuGCGCuuGCGccccucccGCGGCGCg -3' miRNA: 3'- gUUGuaCCGGCU-------UGCG--UGU--------UGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 24662 | 0.72 | 0.713269 |
Target: 5'- -uACGUGGCgcugGGGCGCGaGGCGGUGCg -3' miRNA: 3'- guUGUACCGg---CUUGCGUgUUGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 30373 | 0.72 | 0.713269 |
Target: 5'- gAACAgagucUGuGCCGGGCGCgugcgACggUGGCGCg -3' miRNA: 3'- gUUGU-----AC-CGGCUUGCG-----UGuuGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 35863 | 0.72 | 0.713269 |
Target: 5'- -uACAgGGCCcAACGCGCGGC-GCGCg -3' miRNA: 3'- guUGUaCCGGcUUGCGUGUUGcCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 75460 | 0.72 | 0.720328 |
Target: 5'- gAGCAUgccucccugauccaGGCCGcgacGCGCGCGAccacCGGCGCg -3' miRNA: 3'- gUUGUA--------------CCGGCu---UGCGUGUU----GCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 24509 | 0.72 | 0.722338 |
Target: 5'- -cGCcgGGCCGugcugccGGCGCugGACGGCcggGCg -3' miRNA: 3'- guUGuaCCGGC-------UUGCGugUUGCCG---CG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 103442 | 0.72 | 0.723342 |
Target: 5'- gAugAgggGGCgCGAugGCACAGCGGaccgGCg -3' miRNA: 3'- gUugUa--CCG-GCUugCGUGUUGCCg---CG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 67034 | 0.72 | 0.733334 |
Target: 5'- uGACGUGGgcCCGuacCGCAuCGGCGGCGUc -3' miRNA: 3'- gUUGUACC--GGCuu-GCGU-GUUGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 12139 | 0.72 | 0.733334 |
Target: 5'- gCGACAcaGGgCGAAUGcCACGGCGGgGCg -3' miRNA: 3'- -GUUGUa-CCgGCUUGC-GUGUUGCCgCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 70961 | 0.72 | 0.743236 |
Target: 5'- uCAGCucGGCCGAccaGCGCGCcGCGGC-Ca -3' miRNA: 3'- -GUUGuaCCGGCU---UGCGUGuUGCCGcG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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