miRNA display CGI


Results 101 - 120 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5602 3' -53.6 NC_001806.1 + 3287 0.71 0.800211
Target:  5'- aGGCggGGCgCGucgGCGUGCGGCGGCGg -3'
miRNA:   3'- gUUGuaCCG-GCu--UGCGUGUUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 2527 0.71 0.809213
Target:  5'- gGGCG-GGCCcGGCGCACcgcGCGGCGa -3'
miRNA:   3'- gUUGUaCCGGcUUGCGUGu--UGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 4658 0.7 0.81805
Target:  5'- gCGGCGgcugGGCCGGcggGCGCGgCGACaGGCGg -3'
miRNA:   3'- -GUUGUa---CCGGCU---UGCGU-GUUG-CCGCg -5'
5602 3' -53.6 NC_001806.1 + 49288 0.7 0.81805
Target:  5'- uCGACGggaaGGCCcgcGAGCcCgACGACGGCGCg -3'
miRNA:   3'- -GUUGUa---CCGG---CUUGcG-UGUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 99945 0.7 0.824133
Target:  5'- uGGCG-GGCCGcGCGC-CGggagucgaccccgcGCGGCGCg -3'
miRNA:   3'- gUUGUaCCGGCuUGCGuGU--------------UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 100815 0.71 0.781747
Target:  5'- gCGACAggUGGCgaaaGGGCGCgAUGGCGGCGUc -3'
miRNA:   3'- -GUUGU--ACCGg---CUUGCG-UGUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 50648 0.71 0.781747
Target:  5'- gGGCGUGcggGGACGCGCAcCGGCGCc -3'
miRNA:   3'- gUUGUACcggCUUGCGUGUuGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 24509 0.72 0.722338
Target:  5'- -cGCcgGGCCGugcugccGGCGCugGACGGCcggGCg -3'
miRNA:   3'- guUGuaCCGGC-------UUGCGugUUGCCG---CG- -5'
5602 3' -53.6 NC_001806.1 + 103442 0.72 0.723342
Target:  5'- gAugAgggGGCgCGAugGCACAGCGGaccgGCg -3'
miRNA:   3'- gUugUa--CCG-GCUugCGUGUUGCCg---CG- -5'
5602 3' -53.6 NC_001806.1 + 67034 0.72 0.733334
Target:  5'- uGACGUGGgcCCGuacCGCAuCGGCGGCGUc -3'
miRNA:   3'- gUUGUACC--GGCuu-GCGU-GUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 12139 0.72 0.733334
Target:  5'- gCGACAcaGGgCGAAUGcCACGGCGGgGCg -3'
miRNA:   3'- -GUUGUa-CCgGCUUGC-GUGUUGCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 70961 0.72 0.743236
Target:  5'- uCAGCucGGCCGAccaGCGCGCcGCGGC-Ca -3'
miRNA:   3'- -GUUGuaCCGGCU---UGCGUGuUGCCGcG- -5'
5602 3' -53.6 NC_001806.1 + 92908 0.72 0.743236
Target:  5'- -cGCGUGGUCc-GCGCAgGGCGGgGCg -3'
miRNA:   3'- guUGUACCGGcuUGCGUgUUGCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 1821 0.72 0.743236
Target:  5'- -cACGUuGCCGccgcggcacaGGCGCAgCGGCGGCGCg -3'
miRNA:   3'- guUGUAcCGGC----------UUGCGU-GUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 151563 0.72 0.743236
Target:  5'- gCGGCGggGGCCgcGAugGCgGCGGCGGCGg -3'
miRNA:   3'- -GUUGUa-CCGG--CUugCG-UGUUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 51260 0.72 0.753037
Target:  5'- -uGCAgcGCCGGACGC---GCGGCGCg -3'
miRNA:   3'- guUGUacCGGCUUGCGuguUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 126033 0.72 0.753037
Target:  5'- cCAGCcugcGGCCGGAUGUACAGucuuCGGCGg -3'
miRNA:   3'- -GUUGua--CCGGCUUGCGUGUU----GCCGCg -5'
5602 3' -53.6 NC_001806.1 + 132155 0.72 0.762729
Target:  5'- -cGCGUuGCCGAgcaucccgACGCGCGGCuGGCGUg -3'
miRNA:   3'- guUGUAcCGGCU--------UGCGUGUUG-CCGCG- -5'
5602 3' -53.6 NC_001806.1 + 63009 0.71 0.772303
Target:  5'- gGACG-GGCCccgcGAACGCACAGC-GCGUu -3'
miRNA:   3'- gUUGUaCCGG----CUUGCGUGUUGcCGCG- -5'
5602 3' -53.6 NC_001806.1 + 76481 0.71 0.772303
Target:  5'- gGACcUGGCCGAuaccaaggACGC-CGugGuGCGCg -3'
miRNA:   3'- gUUGuACCGGCU--------UGCGuGUugC-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.