Results 121 - 140 of 211 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5602 | 3' | -53.6 | NC_001806.1 | + | 21908 | 0.7 | 0.843485 |
Target: 5'- gAGCGccGCCGGGCccGCGCGGCGGUGg -3' miRNA: 3'- gUUGUacCGGCUUG--CGUGUUGCCGCg -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 37744 | 0.7 | 0.843485 |
Target: 5'- gCGugGUGGCguCGAugGUGuCGGCGGCGg -3' miRNA: 3'- -GUugUACCG--GCUugCGU-GUUGCCGCg -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 120741 | 0.71 | 0.800211 |
Target: 5'- -----cGGCCGGucuCGC-UAGCGGCGCc -3' miRNA: 3'- guuguaCCGGCUu--GCGuGUUGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 105878 | 0.71 | 0.800211 |
Target: 5'- gGGCAUGGaCCGcAUGUAC--UGGCGCg -3' miRNA: 3'- gUUGUACC-GGCuUGCGUGuuGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 91001 | 0.71 | 0.800211 |
Target: 5'- -cGCG-GGgCGGGCGCgACGGCGGCGg -3' miRNA: 3'- guUGUaCCgGCUUGCG-UGUUGCCGCg -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 92908 | 0.72 | 0.743236 |
Target: 5'- -cGCGUGGUCc-GCGCAgGGCGGgGCg -3' miRNA: 3'- guUGUACCGGcuUGCGUgUUGCCgCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 1821 | 0.72 | 0.743236 |
Target: 5'- -cACGUuGCCGccgcggcacaGGCGCAgCGGCGGCGCg -3' miRNA: 3'- guUGUAcCGGC----------UUGCGU-GUUGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 151563 | 0.72 | 0.743236 |
Target: 5'- gCGGCGggGGCCgcGAugGCgGCGGCGGCGg -3' miRNA: 3'- -GUUGUa-CCGG--CUugCG-UGUUGCCGCg -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 51260 | 0.72 | 0.753037 |
Target: 5'- -uGCAgcGCCGGACGC---GCGGCGCg -3' miRNA: 3'- guUGUacCGGCUUGCGuguUGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 126033 | 0.72 | 0.753037 |
Target: 5'- cCAGCcugcGGCCGGAUGUACAGucuuCGGCGg -3' miRNA: 3'- -GUUGua--CCGGCUUGCGUGUU----GCCGCg -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 132155 | 0.72 | 0.762729 |
Target: 5'- -cGCGUuGCCGAgcaucccgACGCGCGGCuGGCGUg -3' miRNA: 3'- guUGUAcCGGCU--------UGCGUGUUG-CCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 63009 | 0.71 | 0.772303 |
Target: 5'- gGACG-GGCCccgcGAACGCACAGC-GCGUu -3' miRNA: 3'- gUUGUaCCGG----CUUGCGUGUUGcCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 76481 | 0.71 | 0.772303 |
Target: 5'- gGACcUGGCCGAuaccaaggACGC-CGugGuGCGCg -3' miRNA: 3'- gUUGuACCGGCU--------UGCGuGUugC-CGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 50648 | 0.71 | 0.781747 |
Target: 5'- gGGCGUGcggGGACGCGCAcCGGCGCc -3' miRNA: 3'- gUUGUACcggCUUGCGUGUuGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 100815 | 0.71 | 0.781747 |
Target: 5'- gCGACAggUGGCgaaaGGGCGCgAUGGCGGCGUc -3' miRNA: 3'- -GUUGU--ACCGg---CUUGCG-UGUUGCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 108922 | 0.71 | 0.781747 |
Target: 5'- --gUcgGGCCGAgggACGUACAGgccgUGGCGCu -3' miRNA: 3'- guuGuaCCGGCU---UGCGUGUU----GCCGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 128522 | 0.71 | 0.781747 |
Target: 5'- gCGGCAUGGCCaugcGGGcCGCAgccaGACGGCGg -3' miRNA: 3'- -GUUGUACCGG----CUU-GCGUg---UUGCCGCg -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 1562 | 0.71 | 0.791053 |
Target: 5'- gGGCcgGGCCGGcGCGCACcGCcucGCGCc -3' miRNA: 3'- gUUGuaCCGGCU-UGCGUGuUGc--CGCG- -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 34423 | 0.71 | 0.791053 |
Target: 5'- gGGCcgGGCCGGGC-CGgGugGGCGg -3' miRNA: 3'- gUUGuaCCGGCUUGcGUgUugCCGCg -5' |
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5602 | 3' | -53.6 | NC_001806.1 | + | 2739 | 0.71 | 0.800211 |
Target: 5'- uCGGCG-GGCCGGcGCGaCACGGCcacggGGCGCg -3' miRNA: 3'- -GUUGUaCCGGCU-UGC-GUGUUG-----CCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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