miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5603 3' -59.6 NC_001806.1 + 111811 0.66 0.790952
Target:  5'- aCCCUGuCGCUCGuGCgCuuUCUggagcucggguugucGGUGGCg -3'
miRNA:   3'- gGGGAC-GUGGGC-CG-GuuAGA---------------CCACCG- -5'
5603 3' -59.6 NC_001806.1 + 120897 0.66 0.7874
Target:  5'- aCCUUGC-CCCGGCCGGauUCccg-GGCc -3'
miRNA:   3'- gGGGACGuGGGCCGGUU--AGaccaCCG- -5'
5603 3' -59.6 NC_001806.1 + 46375 0.66 0.7874
Target:  5'- aCCCCgacGCGCCaUGGaCCccccgGGUGGCc -3'
miRNA:   3'- -GGGGa--CGUGG-GCC-GGuuagaCCACCG- -5'
5603 3' -59.6 NC_001806.1 + 145717 0.66 0.7874
Target:  5'- -aCCgGCccACCUGGCCGcgCgGGUGcGCg -3'
miRNA:   3'- ggGGaCG--UGGGCCGGUuaGaCCAC-CG- -5'
5603 3' -59.6 NC_001806.1 + 32929 0.66 0.7874
Target:  5'- aCCacacgcaUGCGCCgGGCCGuUgUGG-GGCc -3'
miRNA:   3'- gGGg------ACGUGGgCCGGUuAgACCaCCG- -5'
5603 3' -59.6 NC_001806.1 + 132836 0.66 0.7874
Target:  5'- aCCC-GC-CCgCGGCCGucgggcccGUCUGGacGGCg -3'
miRNA:   3'- gGGGaCGuGG-GCCGGU--------UAGACCa-CCG- -5'
5603 3' -59.6 NC_001806.1 + 78845 0.66 0.7874
Target:  5'- cCUCCUGCacgccgaccugaACCCGaucgaaaacGCguGUCUGGcGGCa -3'
miRNA:   3'- -GGGGACG------------UGGGC---------CGguUAGACCaCCG- -5'
5603 3' -59.6 NC_001806.1 + 79821 0.66 0.7874
Target:  5'- cCCCCagagccaGCGCCCcaGCUuugguGUCUGGUGuGCc -3'
miRNA:   3'- -GGGGa------CGUGGGc-CGGu----UAGACCAC-CG- -5'
5603 3' -59.6 NC_001806.1 + 4282 0.66 0.778429
Target:  5'- aCCCgccgggGCuGCCCGGCCGugaagCggcccGUGGCg -3'
miRNA:   3'- gGGGa-----CG-UGGGCCGGUua---Gac---CACCG- -5'
5603 3' -59.6 NC_001806.1 + 151539 0.66 0.778429
Target:  5'- gCCCgUGgGCCCGGgCGGcCgGG-GGCg -3'
miRNA:   3'- -GGGgACgUGGGCCgGUUaGaCCaCCG- -5'
5603 3' -59.6 NC_001806.1 + 84046 0.66 0.778429
Target:  5'- uCCUCgccgGCACCCccGCCG-UCUGGgagucggGGCc -3'
miRNA:   3'- -GGGGa---CGUGGGc-CGGUuAGACCa------CCG- -5'
5603 3' -59.6 NC_001806.1 + 109395 0.66 0.778429
Target:  5'- aCCCC-GCccccgACCCGGCgAuggGUCgUGG-GGCg -3'
miRNA:   3'- -GGGGaCG-----UGGGCCGgU---UAG-ACCaCCG- -5'
5603 3' -59.6 NC_001806.1 + 104257 0.66 0.775713
Target:  5'- aCCCUGCagcgACCCGcuuaacagcGUCAacagcgugccgcagAUCuUGGUGGCg -3'
miRNA:   3'- gGGGACG----UGGGC---------CGGU--------------UAG-ACCACCG- -5'
5603 3' -59.6 NC_001806.1 + 67509 0.66 0.769333
Target:  5'- cCCCCUGgggaGCCCugGGCCGucgcggcgagagAUCgGGgGGCg -3'
miRNA:   3'- -GGGGACg---UGGG--CCGGU------------UAGaCCaCCG- -5'
5603 3' -59.6 NC_001806.1 + 31872 0.66 0.769333
Target:  5'- gCgCCUGCccGCCCGGaCUGAcCUGGccucUGGCc -3'
miRNA:   3'- -GgGGACG--UGGGCC-GGUUaGACC----ACCG- -5'
5603 3' -59.6 NC_001806.1 + 108627 0.66 0.769333
Target:  5'- aCCCCUGuCAgCC-GCgCGGUgUGcGUGGCu -3'
miRNA:   3'- -GGGGAC-GUgGGcCG-GUUAgAC-CACCG- -5'
5603 3' -59.6 NC_001806.1 + 87445 0.66 0.769333
Target:  5'- gCCCCUGgGugUCCGGCaGAauaaagcccuUCUGGUcGGCc -3'
miRNA:   3'- -GGGGACgU--GGGCCGgUU----------AGACCA-CCG- -5'
5603 3' -59.6 NC_001806.1 + 81553 0.66 0.769333
Target:  5'- gCCaaGCGCCCGGaCGcuAUC-GGUGGUa -3'
miRNA:   3'- gGGgaCGUGGGCCgGU--UAGaCCACCG- -5'
5603 3' -59.6 NC_001806.1 + 73104 0.66 0.769333
Target:  5'- cCCCCcG-ACCCGGCCGGgccgCcGGUcgccgaGGCg -3'
miRNA:   3'- -GGGGaCgUGGGCCGGUUa---GaCCA------CCG- -5'
5603 3' -59.6 NC_001806.1 + 86010 0.66 0.760122
Target:  5'- cUCCCggggGCGCuuGGCCGGggaGGgcagGGCc -3'
miRNA:   3'- -GGGGa---CGUGggCCGGUUagaCCa---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.