miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5603 5' -53.9 NC_001806.1 + 119528 0.66 0.9635
Target:  5'- gGCGCCcUGgUUCACcaggccgucAGCGGGgGCGc- -3'
miRNA:   3'- -UGCGGuACaAAGUG---------UUGCCCgCGCac -5'
5603 5' -53.9 NC_001806.1 + 41372 0.66 0.9635
Target:  5'- cCGCCAgggGgcaUCACGGggcccUGGGCGCGg- -3'
miRNA:   3'- uGCGGUa--Caa-AGUGUU-----GCCCGCGCac -5'
5603 5' -53.9 NC_001806.1 + 117848 0.66 0.95621
Target:  5'- uGCGUCAgacUGUggacgaCGCAGCGGGCGaUGUc -3'
miRNA:   3'- -UGCGGU---ACAaa----GUGUUGCCCGC-GCAc -5'
5603 5' -53.9 NC_001806.1 + 88681 0.66 0.952218
Target:  5'- -gGCCAUGcgcUCGCagagaucucGugGGGCGCGg- -3'
miRNA:   3'- ugCGGUACaa-AGUG---------UugCCCGCGCac -5'
5603 5' -53.9 NC_001806.1 + 91021 0.66 0.952218
Target:  5'- gGCGgCAaGgg-CGCGGCGGGCGgGUu -3'
miRNA:   3'- -UGCgGUaCaaaGUGUUGCCCGCgCAc -5'
5603 5' -53.9 NC_001806.1 + 3520 0.66 0.943057
Target:  5'- gGCGUCGggGUcgUCGCcccccgcgggggaGGCGGGCGCGg- -3'
miRNA:   3'- -UGCGGUa-CAa-AGUG-------------UUGCCCGCGCac -5'
5603 5' -53.9 NC_001806.1 + 13268 0.67 0.938804
Target:  5'- gUGCCGgcgGUcUCAaacGCGGGgGCGUGc -3'
miRNA:   3'- uGCGGUa--CAaAGUgu-UGCCCgCGCAC- -5'
5603 5' -53.9 NC_001806.1 + 148003 0.67 0.938804
Target:  5'- gGCGCCGcGgcUCGCGACuGGCGgGa- -3'
miRNA:   3'- -UGCGGUaCaaAGUGUUGcCCGCgCac -5'
5603 5' -53.9 NC_001806.1 + 35797 0.67 0.937832
Target:  5'- gACGaCCAgcgacgaaCGCAAaacuCGGGCGCGUGg -3'
miRNA:   3'- -UGC-GGUacaaa---GUGUU----GCCCGCGCAC- -5'
5603 5' -53.9 NC_001806.1 + 97910 0.67 0.933845
Target:  5'- aGCGCCAUGUca-ACGAUauguuGGGcCGCGUu -3'
miRNA:   3'- -UGCGGUACAaagUGUUG-----CCC-GCGCAc -5'
5603 5' -53.9 NC_001806.1 + 107273 0.67 0.92864
Target:  5'- uAUGCCGaGUUUC-UAGgGGGCcGCGUGc -3'
miRNA:   3'- -UGCGGUaCAAAGuGUUgCCCG-CGCAC- -5'
5603 5' -53.9 NC_001806.1 + 37751 0.67 0.92864
Target:  5'- gGCGUCgAUGgugUCgGCGGCGGGCGCc-- -3'
miRNA:   3'- -UGCGG-UACaa-AG-UGUUGCCCGCGcac -5'
5603 5' -53.9 NC_001806.1 + 28384 0.67 0.917488
Target:  5'- gGCGCCAUGU----UAGgGGGUGCGg- -3'
miRNA:   3'- -UGCGGUACAaaguGUUgCCCGCGCac -5'
5603 5' -53.9 NC_001806.1 + 95288 0.68 0.905352
Target:  5'- gGCGCgCAUGggg-GCGGgGGGCGCGg- -3'
miRNA:   3'- -UGCG-GUACaaagUGUUgCCCGCGCac -5'
5603 5' -53.9 NC_001806.1 + 33982 0.69 0.8782
Target:  5'- -gGCCggGggUCGCcggggcaggGGCGGGgGCGUGg -3'
miRNA:   3'- ugCGGuaCaaAGUG---------UUGCCCgCGCAC- -5'
5603 5' -53.9 NC_001806.1 + 2799 0.69 0.8782
Target:  5'- gGCGCCGcGgg-CugGGCGGGgGCGg- -3'
miRNA:   3'- -UGCGGUaCaaaGugUUGCCCgCGCac -5'
5603 5' -53.9 NC_001806.1 + 5656 0.69 0.847431
Target:  5'- cUGCCAUGggcggggCGCGA-GGGCGgGUGg -3'
miRNA:   3'- uGCGGUACaaa----GUGUUgCCCGCgCAC- -5'
5603 5' -53.9 NC_001806.1 + 148072 0.7 0.822214
Target:  5'- cUGCCGUGUggCcCGAUGGGCGCc-- -3'
miRNA:   3'- uGCGGUACAaaGuGUUGCCCGCGcac -5'
5603 5' -53.9 NC_001806.1 + 3701 0.7 0.821344
Target:  5'- aGCGCCGcGUUcUCGCGcgccaacAgGGGCGCGUa -3'
miRNA:   3'- -UGCGGUaCAA-AGUGU-------UgCCCGCGCAc -5'
5603 5' -53.9 NC_001806.1 + 77363 0.7 0.804496
Target:  5'- uACGCCAaGgc-CACAggccagACGGGCGCGg- -3'
miRNA:   3'- -UGCGGUaCaaaGUGU------UGCCCGCGCac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.