miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5603 5' -53.9 NC_001806.1 + 95676 0.7 0.79539
Target:  5'- uGCGCCcUG----ACGGCGGGCGCGg- -3'
miRNA:   3'- -UGCGGuACaaagUGUUGCCCGCGCac -5'
5603 5' -53.9 NC_001806.1 + 8732 0.7 0.79539
Target:  5'- gGCGaucaCCAUGccgaCGCAGCGGGUGCGUc -3'
miRNA:   3'- -UGC----GGUACaaa-GUGUUGCCCGCGCAc -5'
5603 5' -53.9 NC_001806.1 + 25921 0.71 0.767197
Target:  5'- gGCGgCGUGcgcgcgCGCGGCGGGCGUGg- -3'
miRNA:   3'- -UGCgGUACaaa---GUGUUGCCCGCGCac -5'
5603 5' -53.9 NC_001806.1 + 77140 0.71 0.767197
Target:  5'- -gGCCGUGgaggagCuCGGgGGGCGCGUGg -3'
miRNA:   3'- ugCGGUACaaa---GuGUUgCCCGCGCAC- -5'
5603 5' -53.9 NC_001806.1 + 148141 0.72 0.707719
Target:  5'- gACGCCccGcccgUCACGGgGGGCGCGg- -3'
miRNA:   3'- -UGCGGuaCaa--AGUGUUgCCCGCGCac -5'
5603 5' -53.9 NC_001806.1 + 2407 0.73 0.666612
Target:  5'- cCGCCAUGcggCGCAGCGGGCcCGa- -3'
miRNA:   3'- uGCGGUACaaaGUGUUGCCCGcGCac -5'
5603 5' -53.9 NC_001806.1 + 82541 0.73 0.65624
Target:  5'- cCGCCAUGgcgccCGCGAUGGGaGCGUGc -3'
miRNA:   3'- uGCGGUACaaa--GUGUUGCCCgCGCAC- -5'
5603 5' -53.9 NC_001806.1 + 98555 0.74 0.62504
Target:  5'- cCGCCAUGUUU-GCGGgccUGGGCGCGUu -3'
miRNA:   3'- uGCGGUACAAAgUGUU---GCCCGCGCAc -5'
5603 5' -53.9 NC_001806.1 + 28317 0.75 0.552789
Target:  5'- gGCGCCAUGUUggggCGCcauguuaGGGgGCGUGg -3'
miRNA:   3'- -UGCGGUACAAa---GUGuug----CCCgCGCAC- -5'
5603 5' -53.9 NC_001806.1 + 9760 0.75 0.542638
Target:  5'- gGCGCCGUGggUU---GgGGGCGCGUGg -3'
miRNA:   3'- -UGCGGUACaaAGuguUgCCCGCGCAC- -5'
5603 5' -53.9 NC_001806.1 + 92963 0.86 0.144443
Target:  5'- gACGCCGUGgacgCGCAucCGGGCGCGUGg -3'
miRNA:   3'- -UGCGGUACaaa-GUGUu-GCCCGCGCAC- -5'
5603 5' -53.9 NC_001806.1 + 114245 1.09 0.004409
Target:  5'- aACGCCAUGUUUCACAACGGGCGCGUGg -3'
miRNA:   3'- -UGCGGUACAAAGUGUUGCCCGCGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.