miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5604 3' -49.5 NC_001806.1 + 149799 0.66 0.998268
Target:  5'- cGCUGGg----GGCg--GCCCUcaGGCCGg -3'
miRNA:   3'- -CGACCaacuaCUGaaaUGGGA--CUGGC- -5'
5604 3' -49.5 NC_001806.1 + 119906 0.66 0.997056
Target:  5'- cGCUGGcc----ACg--GCCCUGACCGa -3'
miRNA:   3'- -CGACCaacuacUGaaaUGGGACUGGC- -5'
5604 3' -49.5 NC_001806.1 + 130365 0.66 0.997056
Target:  5'- uCUGGggacacGACgaUACCCUGACCc -3'
miRNA:   3'- cGACCaacua-CUGaaAUGGGACUGGc -5'
5604 3' -49.5 NC_001806.1 + 137547 0.67 0.995911
Target:  5'- aCUGGgaGGUGAUUUuggaccUcacgaagcgcGCCCUGGCCGc -3'
miRNA:   3'- cGACCaaCUACUGAA------A----------UGGGACUGGC- -5'
5604 3' -49.5 NC_001806.1 + 52419 0.67 0.995504
Target:  5'- aGCUGGgcccgGAUGgaguugagcaucaagGCUUgguucggggccGCCCUGGCCGc -3'
miRNA:   3'- -CGACCaa---CUAC---------------UGAAa----------UGGGACUGGC- -5'
5604 3' -49.5 NC_001806.1 + 75243 0.67 0.995215
Target:  5'- cCUGGUcgacgcGGUGACg--GCCCUGGgCGc -3'
miRNA:   3'- cGACCAa-----CUACUGaaaUGGGACUgGC- -5'
5604 3' -49.5 NC_001806.1 + 120882 0.67 0.993533
Target:  5'- cCUGGUcccccGggGACcUUGCCCcGGCCGg -3'
miRNA:   3'- cGACCAa----CuaCUGaAAUGGGaCUGGC- -5'
5604 3' -49.5 NC_001806.1 + 77942 0.68 0.99253
Target:  5'- aGCUGGaaugggggGGUGACgcggcgGCCCcggGGCCGc -3'
miRNA:   3'- -CGACCaa------CUACUGaaa---UGGGa--CUGGC- -5'
5604 3' -49.5 NC_001806.1 + 124890 0.68 0.991406
Target:  5'- aGCUGucgccgGACUUcGCCCUGGCCc -3'
miRNA:   3'- -CGACcaacuaCUGAAaUGGGACUGGc -5'
5604 3' -49.5 NC_001806.1 + 110933 0.68 0.991406
Target:  5'- --aGGgUGGUGGCgccggccugUAUCCUGGCCGc -3'
miRNA:   3'- cgaCCaACUACUGaa-------AUGGGACUGGC- -5'
5604 3' -49.5 NC_001806.1 + 108200 0.69 0.979397
Target:  5'- cGCUGGgcgUGGuuaUGAUUaccgccGCCCUGGCUGg -3'
miRNA:   3'- -CGACCa--ACU---ACUGAaa----UGGGACUGGC- -5'
5604 3' -49.5 NC_001806.1 + 132980 0.7 0.969718
Target:  5'- cGCUGG-UGGUGGCcgcucccucagaGCCCUgGGCCGg -3'
miRNA:   3'- -CGACCaACUACUGaaa---------UGGGA-CUGGC- -5'
5604 3' -49.5 NC_001806.1 + 119712 0.71 0.959466
Target:  5'- cGCUGGUcGAgugguuggaucgcgGAUgggaaGCCCUGGCCGg -3'
miRNA:   3'- -CGACCAaCUa-------------CUGaaa--UGGGACUGGC- -5'
5604 3' -49.5 NC_001806.1 + 38191 0.74 0.838887
Target:  5'- cGCUGGUUGAgGAUcgUUgggGCCCUG-CCGc -3'
miRNA:   3'- -CGACCAACUaCUG--AAa--UGGGACuGGC- -5'
5604 3' -49.5 NC_001806.1 + 137785 0.76 0.764825
Target:  5'- uGCUGGUgGAUGAUUaacGCCCUGuACCa -3'
miRNA:   3'- -CGACCAaCUACUGAaa-UGGGAC-UGGc -5'
5604 3' -49.5 NC_001806.1 + 113725 1.13 0.006921
Target:  5'- aGCUGGUUGAUGACUUUACCCUGACCGg -3'
miRNA:   3'- -CGACCAACUACUGAAAUGGGACUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.