Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5604 | 3' | -49.5 | NC_001806.1 | + | 149799 | 0.66 | 0.998268 |
Target: 5'- cGCUGGg----GGCg--GCCCUcaGGCCGg -3' miRNA: 3'- -CGACCaacuaCUGaaaUGGGA--CUGGC- -5' |
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5604 | 3' | -49.5 | NC_001806.1 | + | 130365 | 0.66 | 0.997056 |
Target: 5'- uCUGGggacacGACgaUACCCUGACCc -3' miRNA: 3'- cGACCaacua-CUGaaAUGGGACUGGc -5' |
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5604 | 3' | -49.5 | NC_001806.1 | + | 119906 | 0.66 | 0.997056 |
Target: 5'- cGCUGGcc----ACg--GCCCUGACCGa -3' miRNA: 3'- -CGACCaacuacUGaaaUGGGACUGGC- -5' |
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5604 | 3' | -49.5 | NC_001806.1 | + | 137547 | 0.67 | 0.995911 |
Target: 5'- aCUGGgaGGUGAUUUuggaccUcacgaagcgcGCCCUGGCCGc -3' miRNA: 3'- cGACCaaCUACUGAA------A----------UGGGACUGGC- -5' |
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5604 | 3' | -49.5 | NC_001806.1 | + | 52419 | 0.67 | 0.995504 |
Target: 5'- aGCUGGgcccgGAUGgaguugagcaucaagGCUUgguucggggccGCCCUGGCCGc -3' miRNA: 3'- -CGACCaa---CUAC---------------UGAAa----------UGGGACUGGC- -5' |
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5604 | 3' | -49.5 | NC_001806.1 | + | 75243 | 0.67 | 0.995215 |
Target: 5'- cCUGGUcgacgcGGUGACg--GCCCUGGgCGc -3' miRNA: 3'- cGACCAa-----CUACUGaaaUGGGACUgGC- -5' |
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5604 | 3' | -49.5 | NC_001806.1 | + | 120882 | 0.67 | 0.993533 |
Target: 5'- cCUGGUcccccGggGACcUUGCCCcGGCCGg -3' miRNA: 3'- cGACCAa----CuaCUGaAAUGGGaCUGGC- -5' |
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5604 | 3' | -49.5 | NC_001806.1 | + | 77942 | 0.68 | 0.99253 |
Target: 5'- aGCUGGaaugggggGGUGACgcggcgGCCCcggGGCCGc -3' miRNA: 3'- -CGACCaa------CUACUGaaa---UGGGa--CUGGC- -5' |
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5604 | 3' | -49.5 | NC_001806.1 | + | 110933 | 0.68 | 0.991406 |
Target: 5'- --aGGgUGGUGGCgccggccugUAUCCUGGCCGc -3' miRNA: 3'- cgaCCaACUACUGaa-------AUGGGACUGGC- -5' |
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5604 | 3' | -49.5 | NC_001806.1 | + | 124890 | 0.68 | 0.991406 |
Target: 5'- aGCUGucgccgGACUUcGCCCUGGCCc -3' miRNA: 3'- -CGACcaacuaCUGAAaUGGGACUGGc -5' |
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5604 | 3' | -49.5 | NC_001806.1 | + | 108200 | 0.69 | 0.979397 |
Target: 5'- cGCUGGgcgUGGuuaUGAUUaccgccGCCCUGGCUGg -3' miRNA: 3'- -CGACCa--ACU---ACUGAaa----UGGGACUGGC- -5' |
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5604 | 3' | -49.5 | NC_001806.1 | + | 132980 | 0.7 | 0.969718 |
Target: 5'- cGCUGG-UGGUGGCcgcucccucagaGCCCUgGGCCGg -3' miRNA: 3'- -CGACCaACUACUGaaa---------UGGGA-CUGGC- -5' |
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5604 | 3' | -49.5 | NC_001806.1 | + | 119712 | 0.71 | 0.959466 |
Target: 5'- cGCUGGUcGAgugguuggaucgcgGAUgggaaGCCCUGGCCGg -3' miRNA: 3'- -CGACCAaCUa-------------CUGaaa--UGGGACUGGC- -5' |
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5604 | 3' | -49.5 | NC_001806.1 | + | 38191 | 0.74 | 0.838887 |
Target: 5'- cGCUGGUUGAgGAUcgUUgggGCCCUG-CCGc -3' miRNA: 3'- -CGACCAACUaCUG--AAa--UGGGACuGGC- -5' |
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5604 | 3' | -49.5 | NC_001806.1 | + | 137785 | 0.76 | 0.764825 |
Target: 5'- uGCUGGUgGAUGAUUaacGCCCUGuACCa -3' miRNA: 3'- -CGACCAaCUACUGAaa-UGGGAC-UGGc -5' |
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5604 | 3' | -49.5 | NC_001806.1 | + | 113725 | 1.13 | 0.006921 |
Target: 5'- aGCUGGUUGAUGACUUUACCCUGACCGg -3' miRNA: 3'- -CGACCAACUACUGAAAUGGGACUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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