Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5604 | 5' | -61.4 | NC_001806.1 | + | 1492 | 0.66 | 0.6393 |
Target: 5'- aGCGGGgGGGCGUcgucGUCGGGCUc-- -3' miRNA: 3'- cCGCCCgUCCGCGuu--CGGCUCGAcuu -5' |
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5604 | 5' | -61.4 | NC_001806.1 | + | 2527 | 0.67 | 0.553498 |
Target: 5'- gGGCGGGCccGGCGCAccgcgcggcgaucgaGGCCaGGGCc--- -3' miRNA: 3'- -CCGCCCGu-CCGCGU---------------UCGG-CUCGacuu -5' |
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5604 | 5' | -61.4 | NC_001806.1 | + | 2665 | 0.73 | 0.258046 |
Target: 5'- cGGCGGccGCGGGCGCc-GCCGuguGGCUGGg -3' miRNA: 3'- -CCGCC--CGUCCGCGuuCGGC---UCGACUu -5' |
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5604 | 5' | -61.4 | NC_001806.1 | + | 2740 | 0.72 | 0.310182 |
Target: 5'- cGGCGGGCcGGCGCGacacggccacggGGCgCGGGCgGGc -3' miRNA: 3'- -CCGCCCGuCCGCGU------------UCG-GCUCGaCUu -5' |
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5604 | 5' | -61.4 | NC_001806.1 | + | 2807 | 0.73 | 0.264151 |
Target: 5'- gGGCuGGGCGGGgGCGGGCuCGGGCcccgGGGg -3' miRNA: 3'- -CCG-CCCGUCCgCGUUCG-GCUCGa---CUU- -5' |
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5604 | 5' | -61.4 | NC_001806.1 | + | 2852 | 0.71 | 0.36996 |
Target: 5'- cGCGGGCgcggggagggGGGCGCGGGCgucCGAGCcGGGg -3' miRNA: 3'- cCGCCCG----------UCCGCGUUCG---GCUCGaCUU- -5' |
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5604 | 5' | -61.4 | NC_001806.1 | + | 2925 | 0.7 | 0.402667 |
Target: 5'- cGCGGGCcgccgccuccGGGCGgcCGGGCCGGGCcgGGAc -3' miRNA: 3'- cCGCCCG----------UCCGC--GUUCGGCUCGa-CUU- -5' |
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5604 | 5' | -61.4 | NC_001806.1 | + | 3347 | 0.67 | 0.539791 |
Target: 5'- cGCGGG-GGGCugGCGGGCCGGGCc--- -3' miRNA: 3'- cCGCCCgUCCG--CGUUCGGCUCGacuu -5' |
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5604 | 5' | -61.4 | NC_001806.1 | + | 3549 | 0.67 | 0.589176 |
Target: 5'- aGGCGGGCGcGGCGgAcAGCCGccccagggcGGCgagGAu -3' miRNA: 3'- -CCGCCCGU-CCGCgU-UCGGC---------UCGa--CUu -5' |
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5604 | 5' | -61.4 | NC_001806.1 | + | 3727 | 0.67 | 0.539791 |
Target: 5'- gGGCGcguaGGCGcGGCGCAGGCUGgucAGCagGAAg -3' miRNA: 3'- -CCGC----CCGU-CCGCGUUCGGC---UCGa-CUU- -5' |
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5604 | 5' | -61.4 | NC_001806.1 | + | 4437 | 0.67 | 0.589176 |
Target: 5'- gGGCGGGgGcGGCGUccGCCcggGGGCUGc- -3' miRNA: 3'- -CCGCCCgU-CCGCGuuCGG---CUCGACuu -5' |
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5604 | 5' | -61.4 | NC_001806.1 | + | 4671 | 0.66 | 0.6393 |
Target: 5'- cGGCGGGCGcGGCGaCAGGCgGucCgUGGGg -3' miRNA: 3'- -CCGCCCGU-CCGC-GUUCGgCucG-ACUU- -5' |
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5604 | 5' | -61.4 | NC_001806.1 | + | 10113 | 0.67 | 0.559405 |
Target: 5'- cGCGGcGCAcGGCGCGucGGCCGGGgacagacauuCUGGGa -3' miRNA: 3'- cCGCC-CGU-CCGCGU--UCGGCUC----------GACUU- -5' |
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5604 | 5' | -61.4 | NC_001806.1 | + | 10394 | 0.71 | 0.339116 |
Target: 5'- gGGCGGGgggAGGCGgGAGCCGGggggucccGCUGGc -3' miRNA: 3'- -CCGCCCg--UCCGCgUUCGGCU--------CGACUu -5' |
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5604 | 5' | -61.4 | NC_001806.1 | + | 21962 | 0.74 | 0.218504 |
Target: 5'- cGGcCGGGCAGccccgGCGGGUCGAGCUGGAc -3' miRNA: 3'- -CC-GCCCGUCcg---CGUUCGGCUCGACUU- -5' |
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5604 | 5' | -61.4 | NC_001806.1 | + | 22142 | 0.69 | 0.464096 |
Target: 5'- aGGCGGaGgAGGCGCGAcGCCG-GUUcGAGg -3' miRNA: 3'- -CCGCC-CgUCCGCGUU-CGGCuCGA-CUU- -5' |
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5604 | 5' | -61.4 | NC_001806.1 | + | 22184 | 0.7 | 0.419694 |
Target: 5'- cGGCGGccguGUGGGCGC---CCGAGCUGGg -3' miRNA: 3'- -CCGCC----CGUCCGCGuucGGCUCGACUu -5' |
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5604 | 5' | -61.4 | NC_001806.1 | + | 23131 | 0.67 | 0.579214 |
Target: 5'- cGCGGGaCccGCGCcuGCCGAGCUc-- -3' miRNA: 3'- cCGCCC-GucCGCGuuCGGCUCGAcuu -5' |
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5604 | 5' | -61.4 | NC_001806.1 | + | 23278 | 0.66 | 0.629256 |
Target: 5'- cGCGGGagGGGCGCAAGCgcaaGAGUc--- -3' miRNA: 3'- cCGCCCg-UCCGCGUUCGg---CUCGacuu -5' |
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5604 | 5' | -61.4 | NC_001806.1 | + | 24048 | 0.67 | 0.579214 |
Target: 5'- gGGCGGGCAauuggaccGGCGCccccgacguGUCGGcGCUGGg -3' miRNA: 3'- -CCGCCCGU--------CCGCGuu-------CGGCU-CGACUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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