miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5604 5' -61.4 NC_001806.1 + 1492 0.66 0.6393
Target:  5'- aGCGGGgGGGCGUcgucGUCGGGCUc-- -3'
miRNA:   3'- cCGCCCgUCCGCGuu--CGGCUCGAcuu -5'
5604 5' -61.4 NC_001806.1 + 2527 0.67 0.553498
Target:  5'- gGGCGGGCccGGCGCAccgcgcggcgaucgaGGCCaGGGCc--- -3'
miRNA:   3'- -CCGCCCGu-CCGCGU---------------UCGG-CUCGacuu -5'
5604 5' -61.4 NC_001806.1 + 2665 0.73 0.258046
Target:  5'- cGGCGGccGCGGGCGCc-GCCGuguGGCUGGg -3'
miRNA:   3'- -CCGCC--CGUCCGCGuuCGGC---UCGACUu -5'
5604 5' -61.4 NC_001806.1 + 2740 0.72 0.310182
Target:  5'- cGGCGGGCcGGCGCGacacggccacggGGCgCGGGCgGGc -3'
miRNA:   3'- -CCGCCCGuCCGCGU------------UCG-GCUCGaCUu -5'
5604 5' -61.4 NC_001806.1 + 2807 0.73 0.264151
Target:  5'- gGGCuGGGCGGGgGCGGGCuCGGGCcccgGGGg -3'
miRNA:   3'- -CCG-CCCGUCCgCGUUCG-GCUCGa---CUU- -5'
5604 5' -61.4 NC_001806.1 + 2852 0.71 0.36996
Target:  5'- cGCGGGCgcggggagggGGGCGCGGGCgucCGAGCcGGGg -3'
miRNA:   3'- cCGCCCG----------UCCGCGUUCG---GCUCGaCUU- -5'
5604 5' -61.4 NC_001806.1 + 2925 0.7 0.402667
Target:  5'- cGCGGGCcgccgccuccGGGCGgcCGGGCCGGGCcgGGAc -3'
miRNA:   3'- cCGCCCG----------UCCGC--GUUCGGCUCGa-CUU- -5'
5604 5' -61.4 NC_001806.1 + 3347 0.67 0.539791
Target:  5'- cGCGGG-GGGCugGCGGGCCGGGCc--- -3'
miRNA:   3'- cCGCCCgUCCG--CGUUCGGCUCGacuu -5'
5604 5' -61.4 NC_001806.1 + 3549 0.67 0.589176
Target:  5'- aGGCGGGCGcGGCGgAcAGCCGccccagggcGGCgagGAu -3'
miRNA:   3'- -CCGCCCGU-CCGCgU-UCGGC---------UCGa--CUu -5'
5604 5' -61.4 NC_001806.1 + 3727 0.67 0.539791
Target:  5'- gGGCGcguaGGCGcGGCGCAGGCUGgucAGCagGAAg -3'
miRNA:   3'- -CCGC----CCGU-CCGCGUUCGGC---UCGa-CUU- -5'
5604 5' -61.4 NC_001806.1 + 4437 0.67 0.589176
Target:  5'- gGGCGGGgGcGGCGUccGCCcggGGGCUGc- -3'
miRNA:   3'- -CCGCCCgU-CCGCGuuCGG---CUCGACuu -5'
5604 5' -61.4 NC_001806.1 + 4671 0.66 0.6393
Target:  5'- cGGCGGGCGcGGCGaCAGGCgGucCgUGGGg -3'
miRNA:   3'- -CCGCCCGU-CCGC-GUUCGgCucG-ACUU- -5'
5604 5' -61.4 NC_001806.1 + 10113 0.67 0.559405
Target:  5'- cGCGGcGCAcGGCGCGucGGCCGGGgacagacauuCUGGGa -3'
miRNA:   3'- cCGCC-CGU-CCGCGU--UCGGCUC----------GACUU- -5'
5604 5' -61.4 NC_001806.1 + 10394 0.71 0.339116
Target:  5'- gGGCGGGgggAGGCGgGAGCCGGggggucccGCUGGc -3'
miRNA:   3'- -CCGCCCg--UCCGCgUUCGGCU--------CGACUu -5'
5604 5' -61.4 NC_001806.1 + 21962 0.74 0.218504
Target:  5'- cGGcCGGGCAGccccgGCGGGUCGAGCUGGAc -3'
miRNA:   3'- -CC-GCCCGUCcg---CGUUCGGCUCGACUU- -5'
5604 5' -61.4 NC_001806.1 + 22142 0.69 0.464096
Target:  5'- aGGCGGaGgAGGCGCGAcGCCG-GUUcGAGg -3'
miRNA:   3'- -CCGCC-CgUCCGCGUU-CGGCuCGA-CUU- -5'
5604 5' -61.4 NC_001806.1 + 22184 0.7 0.419694
Target:  5'- cGGCGGccguGUGGGCGC---CCGAGCUGGg -3'
miRNA:   3'- -CCGCC----CGUCCGCGuucGGCUCGACUu -5'
5604 5' -61.4 NC_001806.1 + 23131 0.67 0.579214
Target:  5'- cGCGGGaCccGCGCcuGCCGAGCUc-- -3'
miRNA:   3'- cCGCCC-GucCGCGuuCGGCUCGAcuu -5'
5604 5' -61.4 NC_001806.1 + 23278 0.66 0.629256
Target:  5'- cGCGGGagGGGCGCAAGCgcaaGAGUc--- -3'
miRNA:   3'- cCGCCCg-UCCGCGUUCGg---CUCGacuu -5'
5604 5' -61.4 NC_001806.1 + 24048 0.67 0.579214
Target:  5'- gGGCGGGCAauuggaccGGCGCccccgacguGUCGGcGCUGGg -3'
miRNA:   3'- -CCGCCCGU--------CCGCGuu-------CGGCU-CGACUu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.