miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5605 3' -56.9 NC_001806.1 + 86334 0.66 0.852696
Target:  5'- gGCCCCGAaCGccuGCAGUcCCUCggGCa -3'
miRNA:   3'- gCGGGGCUaGUu--UGUCGcGGAGgaCG- -5'
5605 3' -56.9 NC_001806.1 + 75152 0.66 0.852696
Target:  5'- cCGUCUCGAacgccaUCAAcgccgGCAGCGCCgCCgucGCa -3'
miRNA:   3'- -GCGGGGCU------AGUU-----UGUCGCGGaGGa--CG- -5'
5605 3' -56.9 NC_001806.1 + 6073 0.66 0.852696
Target:  5'- gGCCCCGGgggcgggccCGGGCGGCGgggggcgggucUCUCCgGCg -3'
miRNA:   3'- gCGGGGCUa--------GUUUGUCGC-----------GGAGGaCG- -5'
5605 3' -56.9 NC_001806.1 + 23236 0.66 0.851916
Target:  5'- aCGCCgCCGAcgCGcuGGCGGCcgccgccGCCUCCgccGCg -3'
miRNA:   3'- -GCGG-GGCUa-GU--UUGUCG-------CGGAGGa--CG- -5'
5605 3' -56.9 NC_001806.1 + 3151 0.66 0.851916
Target:  5'- gGCCCCGGcgaccaggcUCAcggcgcgcacGGCGGCcacggcgGCCUCgCUGCc -3'
miRNA:   3'- gCGGGGCU---------AGU----------UUGUCG-------CGGAG-GACG- -5'
5605 3' -56.9 NC_001806.1 + 17369 0.66 0.849563
Target:  5'- uGCCCCGGacuuccgucgacgCAAGCccGGCccuguggaGCUUCCUGCu -3'
miRNA:   3'- gCGGGGCUa------------GUUUG--UCG--------CGGAGGACG- -5'
5605 3' -56.9 NC_001806.1 + 91607 0.67 0.844804
Target:  5'- uGCCCUGuaaccuaugCAccuucGACAcGCGCCacgCCUGCg -3'
miRNA:   3'- gCGGGGCua-------GU-----UUGU-CGCGGa--GGACG- -5'
5605 3' -56.9 NC_001806.1 + 125941 0.67 0.844804
Target:  5'- gGCCCUGcUCcGGCGGgGCCUCaCgaccGCa -3'
miRNA:   3'- gCGGGGCuAGuUUGUCgCGGAG-Ga---CG- -5'
5605 3' -56.9 NC_001806.1 + 129595 0.67 0.836721
Target:  5'- uGCCCgGGUUuucGGC-GCGCCggugCCUGUu -3'
miRNA:   3'- gCGGGgCUAGu--UUGuCGCGGa---GGACG- -5'
5605 3' -56.9 NC_001806.1 + 6142 0.67 0.836721
Target:  5'- aCGCCCg---CAGACGGCGCCggCCa-- -3'
miRNA:   3'- -GCGGGgcuaGUUUGUCGCGGa-GGacg -5'
5605 3' -56.9 NC_001806.1 + 23705 0.67 0.836721
Target:  5'- gGCCUCGAUCGccgcgcGguGCGCCgggCCcGCc -3'
miRNA:   3'- gCGGGGCUAGUu-----UguCGCGGa--GGaCG- -5'
5605 3' -56.9 NC_001806.1 + 85978 0.67 0.828455
Target:  5'- gCGCCUCccggggGGUCGgcaggcGACGGCGUCUCCcggggGCg -3'
miRNA:   3'- -GCGGGG------CUAGU------UUGUCGCGGAGGa----CG- -5'
5605 3' -56.9 NC_001806.1 + 22178 0.67 0.828455
Target:  5'- gCGCCCCGG-CGgccguGugGGCGCC-CgaGCu -3'
miRNA:   3'- -GCGGGGCUaGU-----UugUCGCGGaGgaCG- -5'
5605 3' -56.9 NC_001806.1 + 107685 0.67 0.820012
Target:  5'- aCGCCCUGAUCc----GCGCCUucgucCCUGa -3'
miRNA:   3'- -GCGGGGCUAGuuuguCGCGGA-----GGACg -5'
5605 3' -56.9 NC_001806.1 + 72598 0.67 0.820012
Target:  5'- cCGCCaCCGAcccgggcccgUCGcgacGACAGgGCCUCCg-- -3'
miRNA:   3'- -GCGG-GGCU----------AGU----UUGUCgCGGAGGacg -5'
5605 3' -56.9 NC_001806.1 + 26918 0.67 0.820012
Target:  5'- uCGCCCCacGUCcGGguGCGCCaCCUGg -3'
miRNA:   3'- -GCGGGGc-UAGuUUguCGCGGaGGACg -5'
5605 3' -56.9 NC_001806.1 + 46107 0.67 0.820012
Target:  5'- gGCCCgGggCcuGCgcgGGCGCCUCC-GCc -3'
miRNA:   3'- gCGGGgCuaGuuUG---UCGCGGAGGaCG- -5'
5605 3' -56.9 NC_001806.1 + 1952 0.67 0.820012
Target:  5'- gCGCCgCCGGcCAGcgcACGGCGCa--CUGCa -3'
miRNA:   3'- -GCGG-GGCUaGUU---UGUCGCGgagGACG- -5'
5605 3' -56.9 NC_001806.1 + 131180 0.67 0.820012
Target:  5'- aCGCCCaccacAUCGAccACAGCGCCUgCCggacccacagGCa -3'
miRNA:   3'- -GCGGGgc---UAGUU--UGUCGCGGA-GGa---------CG- -5'
5605 3' -56.9 NC_001806.1 + 88653 0.67 0.811401
Target:  5'- aCGCgCCCGGggacUCGcGCAGgGCCgcggCCaUGCg -3'
miRNA:   3'- -GCG-GGGCU----AGUuUGUCgCGGa---GG-ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.