miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5605 5' -55.3 NC_001806.1 + 77301 0.67 0.864717
Target:  5'- -cGGUGGAGGAguuCCGggGCgCG-CGg -3'
miRNA:   3'- uuUCACCUCCUgu-GGCuuCG-GCuGCa -5'
5605 5' -55.3 NC_001806.1 + 27025 0.67 0.856994
Target:  5'- cGGGUGGcGGAgGCCGAGGCgGucauCGg -3'
miRNA:   3'- uUUCACCuCCUgUGGCUUCGgCu---GCa -5'
5605 5' -55.3 NC_001806.1 + 53392 0.68 0.849063
Target:  5'- ----cGaAGGACGCCGGAGCCGGUGa -3'
miRNA:   3'- uuucaCcUCCUGUGGCUUCGGCUGCa -5'
5605 5' -55.3 NC_001806.1 + 57033 0.68 0.840931
Target:  5'- uGGGUGGccGGGC-CCGggGCCGGgGc -3'
miRNA:   3'- uUUCACCu-CCUGuGGCuuCGGCUgCa -5'
5605 5' -55.3 NC_001806.1 + 93479 0.68 0.840931
Target:  5'- ---cUGGAGGugGCGCaCGAGGCCGAgGc -3'
miRNA:   3'- uuucACCUCC--UGUG-GCUUCGGCUgCa -5'
5605 5' -55.3 NC_001806.1 + 22128 0.68 0.832605
Target:  5'- ---cUGGGGGGCGcCCGAGGCgGAgGa -3'
miRNA:   3'- uuucACCUCCUGU-GGCUUCGgCUgCa -5'
5605 5' -55.3 NC_001806.1 + 151274 0.68 0.832605
Target:  5'- cGGGcGGuGGGgGCCGggGCCGGgGg -3'
miRNA:   3'- uUUCaCCuCCUgUGGCuuCGGCUgCa -5'
5605 5' -55.3 NC_001806.1 + 38578 0.68 0.832605
Target:  5'- -cGG-GGAGaGGCACCGAAGCgUGAcCGUg -3'
miRNA:   3'- uuUCaCCUC-CUGUGGCUUCG-GCU-GCA- -5'
5605 5' -55.3 NC_001806.1 + 102344 0.68 0.8154
Target:  5'- ----cGGGGGACGucccCCGggGCCGcCGg -3'
miRNA:   3'- uuucaCCUCCUGU----GGCuuCGGCuGCa -5'
5605 5' -55.3 NC_001806.1 + 41226 0.69 0.788338
Target:  5'- uAAAGUGGcccAGGGCcUCGugGAGCCGGCGa -3'
miRNA:   3'- -UUUCACC---UCCUGuGGC--UUCGGCUGCa -5'
5605 5' -55.3 NC_001806.1 + 19111 0.69 0.759982
Target:  5'- cGGGGUGG-GGGC-CCGggGCUG-CGUu -3'
miRNA:   3'- -UUUCACCuCCUGuGGCuuCGGCuGCA- -5'
5605 5' -55.3 NC_001806.1 + 10391 0.7 0.740483
Target:  5'- gGGGGgcgGGGGGAgGCgGGAGCCGGgGg -3'
miRNA:   3'- -UUUCa--CCUCCUgUGgCUUCGGCUgCa -5'
5605 5' -55.3 NC_001806.1 + 113270 0.7 0.730584
Target:  5'- --uGUGGGGGugGCCGAcguggAGCUGcCGg -3'
miRNA:   3'- uuuCACCUCCugUGGCU-----UCGGCuGCa -5'
5605 5' -55.3 NC_001806.1 + 99625 0.7 0.730584
Target:  5'- uGGGUGGaAGGACAUgGggGCgGugGc -3'
miRNA:   3'- uUUCACC-UCCUGUGgCuuCGgCugCa -5'
5605 5' -55.3 NC_001806.1 + 6459 0.7 0.720597
Target:  5'- cGGAGgagGGGGGACGCgGggGCgGAgGa -3'
miRNA:   3'- -UUUCa--CCUCCUGUGgCuuCGgCUgCa -5'
5605 5' -55.3 NC_001806.1 + 6547 0.7 0.720597
Target:  5'- cGGAGgagGGGGGACGCgGggGCgGAgGa -3'
miRNA:   3'- -UUUCa--CCUCCUGUGgCuuCGgCUgCa -5'
5605 5' -55.3 NC_001806.1 + 6503 0.7 0.720597
Target:  5'- cGGAGgagGGGGGACGCgGggGCgGAgGa -3'
miRNA:   3'- -UUUCa--CCUCCUGUGgCuuCGgCUgCa -5'
5605 5' -55.3 NC_001806.1 + 98619 0.71 0.7004
Target:  5'- cAAGGUGGugauGGGCAUCGuGGgCGGCGUg -3'
miRNA:   3'- -UUUCACCu---CCUGUGGCuUCgGCUGCA- -5'
5605 5' -55.3 NC_001806.1 + 55708 0.71 0.69021
Target:  5'- --uGUGGGGGugACCuccGGGCUGGCGg -3'
miRNA:   3'- uuuCACCUCCugUGGc--UUCGGCUGCa -5'
5605 5' -55.3 NC_001806.1 + 14385 0.71 0.679969
Target:  5'- uGGGGUGaGGGGACACUGggGCguGCGUu -3'
miRNA:   3'- -UUUCAC-CUCCUGUGGCuuCGgcUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.