miRNA display CGI


Results 1 - 20 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5606 3' -62.4 NC_001806.1 + 1612 0.66 0.618867
Target:  5'- cGCAGCGGCgCGCCcaGGCC-CCAGc-- -3'
miRNA:   3'- cUGUUGCCG-GCGGa-CCGGuGGUCcca -5'
5606 3' -62.4 NC_001806.1 + 2662 0.72 0.289219
Target:  5'- gGGCGGCGGCCGCggGcGCCGCCguguggcugggccccGGGGg -3'
miRNA:   3'- -CUGUUGCCGGCGgaC-CGGUGG---------------UCCCa -5'
5606 3' -62.4 NC_001806.1 + 2702 0.66 0.628764
Target:  5'- nGGCuGCcGCCGCCa-GCCGcCCAGGGg -3'
miRNA:   3'- -CUGuUGcCGGCGGacCGGU-GGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 3034 0.71 0.342204
Target:  5'- uGCGcUGGCCGCCgccGCCAgCAGGGg -3'
miRNA:   3'- cUGUuGCCGGCGGac-CGGUgGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 3384 0.67 0.521467
Target:  5'- --gGACGGCCGCCaGGUCGCCGu--- -3'
miRNA:   3'- cugUUGCCGGCGGaCCGGUGGUccca -5'
5606 3' -62.4 NC_001806.1 + 3639 0.67 0.537695
Target:  5'- cGGCGACGGCgGCgacccccucgucauCUGcGCCggcGCCGGGGc -3'
miRNA:   3'- -CUGUUGCCGgCG--------------GAC-CGG---UGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 3799 0.67 0.521467
Target:  5'- cACGGCGGCCGCCgcgugCGCCAGGc- -3'
miRNA:   3'- cUGUUGCCGGCGGaccg-GUGGUCCca -5'
5606 3' -62.4 NC_001806.1 + 3834 0.67 0.559916
Target:  5'- aGCGGcCGGCCGCCaUGGCguaGCCcagguGGGg -3'
miRNA:   3'- cUGUU-GCCGGCGG-ACCGg--UGGu----CCCa -5'
5606 3' -62.4 NC_001806.1 + 4057 0.69 0.439264
Target:  5'- aGCu-CGGgCGCCcacacGGCCGCCGGGGc -3'
miRNA:   3'- cUGuuGCCgGCGGa----CCGGUGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 4351 0.67 0.55022
Target:  5'- cGGCGcucgauGCGGcCCGCggaGGCCGCgGGGGUc -3'
miRNA:   3'- -CUGU------UGCC-GGCGga-CCGGUGgUCCCA- -5'
5606 3' -62.4 NC_001806.1 + 5093 0.71 0.313478
Target:  5'- gGGCGGCGGcCCGUCgguggGGCCcggggaGCCGGGGc -3'
miRNA:   3'- -CUGUUGCC-GGCGGa----CCGG------UGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 9173 0.71 0.313478
Target:  5'- aGACAACGGCCGUgUaGCC-CgGGGGUc -3'
miRNA:   3'- -CUGUUGCCGGCGgAcCGGuGgUCCCA- -5'
5606 3' -62.4 NC_001806.1 + 9983 0.67 0.530991
Target:  5'- uGACGGaGGCCGCCUGccacGCCAgccCCGGGa- -3'
miRNA:   3'- -CUGUUgCCGGCGGAC----CGGU---GGUCCca -5'
5606 3' -62.4 NC_001806.1 + 12068 0.69 0.448042
Target:  5'- cGCAaaaGCGGCUGUUgGGCCAgauugagcuCCAGGGUg -3'
miRNA:   3'- cUGU---UGCCGGCGGaCCGGU---------GGUCCCA- -5'
5606 3' -62.4 NC_001806.1 + 19662 0.68 0.493317
Target:  5'- cGCAACGGUCGCCgccGGUCGCCucgacgAGGa- -3'
miRNA:   3'- cUGUUGCCGGCGGa--CCGGUGG------UCCca -5'
5606 3' -62.4 NC_001806.1 + 21481 0.68 0.493317
Target:  5'- cGACGACGcagccgacGCCGCC-GGCgACCGGGc- -3'
miRNA:   3'- -CUGUUGC--------CGGCGGaCCGgUGGUCCca -5'
5606 3' -62.4 NC_001806.1 + 21925 0.66 0.599109
Target:  5'- cGCGGCGGUgGCC-GGCCgcgacGCCAcGGGc -3'
miRNA:   3'- cUGUUGCCGgCGGaCCGG-----UGGU-CCCa -5'
5606 3' -62.4 NC_001806.1 + 22107 0.74 0.216931
Target:  5'- gGGCGACaGCCGCCcgGGCCuCUGGGGg -3'
miRNA:   3'- -CUGUUGcCGGCGGa-CCGGuGGUCCCa -5'
5606 3' -62.4 NC_001806.1 + 22183 0.66 0.569658
Target:  5'- -cCGGCGGCCGUgUGGgCGCCcgagcuGGGc -3'
miRNA:   3'- cuGUUGCCGGCGgACCgGUGGu-----CCCa -5'
5606 3' -62.4 NC_001806.1 + 22452 0.73 0.244028
Target:  5'- cGCGGCGGCCGCCgUGGCCAUgAGc-- -3'
miRNA:   3'- cUGUUGCCGGCGG-ACCGGUGgUCcca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.